Query= MSMg01no194_k23.b1 MSMg01no194_k23.b1 CHROMAT_FILE:
MSMg01no194_k23.b1 PHD_FILE: MSMg01no194_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:38 2005
(679 letters)
>mm_chr1_147722966_147724048
Length = 1083
Score = 692 bits (358), Expect = 0.0
Identities = 384/394 (97%), Gaps = 4/394 (1%)
Strand = Plus / Minus
Query: 290 gttaatatcccgatctatacccagtaaacagagagatctaaccggatatatagagtgata 349
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 gttaatatcctgatctatacccagtaaacagagagatctaaccggatatatagagtgata 1024
Query: 350 ttttgaaacttcaaagcccacccctggtgacatgcctcctcctaataaggtaacttttat 409
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1023 ttttgaaacctcaaagcccacccctagtgacatgcctcctcctaataaggtaacttttat 964
Query: 410 atttcctaaagagttctattcaccagggaccaagtattcaaatatatgaacccatgaagg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 atttcctaaagagttctattcaccagggaccaagtattcaaatatatgaacccatgaagg 904
Query: 470 acatctcattaaaataatcaaatatgccttccaggacatgaaggtctgctttctgaacac 529
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 903 acatctcattaaaataatcaaatatgcctttcaggacatgaaggtctgctttctgaacac 844
Query: 530 atccattcccttcttcctctaagtcctttgttttcctttagtattcttctaccttcagaa 589
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 843 atccattcccttcttcctctaagtcctttggtttcctttagtattcttctaccttcagaa 784
Query: 590 cctatcttctagggtccacaagaggaaaaagcacatgatatttg---tttttttgaatgt 646
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 783 cctatcttctagggtccacaagaggaaaaagcacatgatatttgtttttttttttaatgt 724
Query: 647 aacttaa-tttttttaacagatcaatatccaatt 679
||||||| ||||||||||||||||||||||||||
Sbjct: 723 aacttaattttttttaacagatcaatatccaatt 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1083
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1073
Effective search space: 717837
Effective search space used: 717837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_k23.g1 MSMg01no194_k23.g1 CHROMAT_FILE:
MSMg01no194_k23.g1 PHD_FILE: MSMg01no194_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:38 2005
(654 letters)
>mm_chr1_147694692_147695745
Length = 1054
Score = 1212 bits (627), Expect = 0.0
Identities = 647/654 (98%)
Strand = Plus / Plus
Query: 1 ggataggtgctctaggtaacttcacaattggtggacggcccactgagaggagattaacct 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ggataggtgctctaggtaacttcacaattggtggatggcccactgagaggagattaacct 260
Query: 61 cagagactgtgcctttgaggtataaataatatgcttgattcctttataccctactttctg 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 cagagactgtgcctttgaggtataaataatatgcttgattccttcgtaccctactttctg 320
Query: 121 gttcctagtttccagagagagcaaattacatctggcatgcctacctatcctgatttcctc 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcctagtttccagagagaacaaattacatctggcatgcctacctatcctgatttcctc 380
Query: 181 tctcaccatcggcatacacctatcaaactgaagtctcgaggaaatgaaatatgtgagtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcaccatcggcatacacctatcaaactgaagtctcgaggaaatgaaatatgtgagtac 440
Query: 241 atgacactaagtaaatttataatctttaaattacttatcaaatatttttatcacactgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgacactaagtaaatttataatctttaaattacttatcaaatatttttatcacactgac 500
Query: 301 aaaataattaggtaaacaatctgccacttagcttgttaaaactactgttattataggaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaataattaggtaaacaatctgccacttagcttgttaaaactactgttattataggaga 560
Query: 361 ctttagccgaggcttaagtgagtgctgtgatttaatgcaaggatacaattagaatgtagg 420
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttggtcgaggcttaagtgagtgctgtgatttaatgcaaggatacaattagaatgtagg 620
Query: 421 caataatttcacatcctcagagatcatctaagtgttaatttaactccatgccccaacaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caataatttcacatcctcagagatcatctaagtgttaatttaactccatgccccaacaca 680
Query: 481 gaattgctgaaaggtatcagttctttattctctcagtgtcttgtcatgtatgctttctat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaattgctgaaaggtatcagttctttattctctcagtgtcttgtcatgtatgctttctat 740
Query: 541 atggcaacagaaaaacaggatattttcttcaaacaagctagtgaaagaggcaagtaggat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atggcaacagaaaaacaggatattttcttcaaacaagctagtgaaagaggcaagtaggat 800
Query: 601 gaataaagtagaagctctagcactactctttaattttttatttcagntctgctg 654
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 gaataaagtagaagctctagcactactctttaattttttatttcagttctgctg 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
