CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCTGACTCCTAACCTCTTCCACTTCTAACATGCTCACAATATT
ATACAAACATTTGAAAAAATTAACTAGGATACTGAGTATTTAAAATACTA
GGTTTTAATTATATATATTTCCCATAAAATTTGCACCAATTAGTTTATGT
ACAGAGGAGAGTTCAGCCTAGATGACAAGGAGGTCATATAAAGAAGTCCA
GACAAGTCATAAGAACCTAAAGGGAATGTCAGGGAATAGGGTATTCTAGG
AGAAGGGAATGAAAAGGAATGTCCGTTGAGATACTTAGCAAGGGAAATGG
GTTCCCTTTCAAAATGCATGTTCCAATGATAGTAATTAATGTAAGGCTTC
TAATTGGAACACATTGTCTCATCTACTATACCAGGATATACTCTATACCT
AGGGTATTAAAGGTATTAACAGATTTAATCTTTGCAATAATCTTATGGAA
AGGAAGCTAGTATAATTACTAATTTGCAGAGCAAGAAATGGAATCTATGC
TAAAGTAGGTAAATTGCCCTAGATATGTTACTATGACTTGTTCTCTGCTC
CTTCAAACTCGAAAGGCCAAAGTCTTAAGCAGCAGTATGTAATGTGTAGT
GTCAGGCCAGCAACAGCAGCAGCACTCCCTGGCTGCCTTTTAATATGCAA
ACCTTAGAACCAACCAATGTGATTCAGGCCTTCTGGGCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGCGACAAGAACATAGGCTT
TTAGCAAAGGGTCATTGCTGAGAAGAAATTCTGGGCAAGTAAATAGTGGT
TAAATGGTTCAATTACTTTGAAGTTTCAGCCTCAGCTGCCGGGGCTGTCA
TTACTGTGTTTCTCCAATAAGTGTGATTTTTACCCACATGACAGCTTGGG
AATCAAGGAGATGTGTATGAGACATGGCATTTGGAACTATTTTAGAGGCT
TTAATGACCTCACTTTAAAAAAGTAAGGTGGTGTTCACTGGCAACAGAAT
AGTATATACTTATTTTTGTATTCCCCCCCCCCCTGGAAAAGAATGTTATG
TAGCTTTATATAACTGGCGTATAAAGTTGACTTTAAACAAACTTATTCTT
CACATGGACTTTGAAAACTTATCTCATCAATAAAAGAATTACACATCTAT
TCTCATTTCATTAAAAATAGTCATGAGTGAACATCTTTGCATGGAACTCC
TACCCTCTTAGTTGATGGAAGGGTGGTTTAGCTTTTCAACAAAACATATA
CACATGCAAACGCACACCATTCCATCATGGAGGTGAAACAGAAAAGTTTT
AGTTATATTCAAAGACATGTTATGCCTTGACAGACACAACCAAAATTAAA
GATGATACATAATTTATTTCATTATCAGAATATATGTCAATAAA

Query= MSMg01no194_n05.b1 MSMg01no194_n05.b1 CHROMAT_FILE:
MSMg01no194_n05.b1 PHD_FILE: MSMg01no194_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:49 2005
         (694 letters)



>mm_chr1_70811226_70812319
          Length = 1094

 Score = 1239 bits (641), Expect = 0.0
 Identities = 677/689 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatctgactcctaacctcttccacttctaacatgctcacaatattatacaaaca 64
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaataccatctgacttctaacctcttccacttctaacatgctcacaatattatacaaaca 264

                                                                       
Query: 65  tttgaaaaaattaactaggatactgagtatttaaaatactaggttttaattatatatatt 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgaaaaaattaactaggacactgagtatttaaaatactaggttttaattatatatatt 324

                                                                       
Query: 125 tcccataaaatttgcaccaattagtttatgtacagaggagagttcagcctagatgacaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcccataaaatttgcaccaattagtttatgtacagaggagagttcagcctagatgacaag 384

                                                                       
Query: 185 gaggtcatataaagaagtccagacaagtcataagaacctaaagggaatgtcagggaatag 244
           || ||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct: 385 gaagtcatataaagaagtccagacaagtcataggcacctaaagggaatgtcagggaacag 444

                                                                       
Query: 245 ggtattctaggagaagggaatgaaaaggaatgtccgttgagatacttagcaagggaaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtattctaggagaagggaatgaaaaggaatgtccgttgagatacttagcaagggaaatg 504

                                                                       
Query: 305 ggttccctttcaaaatgcatgttccaatgatagtaattaatgtaaggcttctaattggaa 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggttccctttcaaaatgcacgttccaatgatagtaattaatgtaaggcttctaattggaa 564

                                                                       
Query: 365 cacattgtctcatctactataccaggatatactctatacctagggtattaaaggtattaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacattgtctcatctactataccaggatatactctatacctagggtattaaaggtattaa 624

                                                                       
Query: 425 cagatttaatctttgcaataatcttatggaaaggaagctagtataattactaatttgcag 484
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 cagatttaatctttgcaataatcttatggaaaggaagctaatataattactaatttgcag 684

                                                                       
Query: 485 agcaagaaatggaatctatgctaaagtaggtaaattgccctagatatgttactatgactt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agcaagaaatggaatctatgctaaagtaggtaaattgccctagatatgttactatgactt 744

                                                                       
Query: 545 gttctctgctccttcaaactcgaaaggccaaagtcttaagcagcagtatgtaatgtgtag 604
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 745 gttctctgctccttcaaactcgaaaggccaaagtcttaagcatcagtgtgtaatgtgtag 804

                                                                       
Query: 605 tgtcaggccagcaacagcagcagcactccctggctgccttttaatatgcaaaccttagaa 664
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 805 tgtcaggccagcaacagcagcagcaccccctggctgccttttaatatgcaaaccttagaa 864

                                        
Query: 665 ccaaccaatgtgattcaggccttctgggc 693
           |||||||||||||||||||||||||||||
Sbjct: 865 ccaaccaatgtgattcaggccttctgggc 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no194_n05.g1 MSMg01no194_n05.g1 CHROMAT_FILE:
MSMg01no194_n05.g1 PHD_FILE: MSMg01no194_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:49 2005
         (287 letters)



>mm_chr1_70912350_70913036
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtgcgacaagaacataggcttttagcaaagggtcattgctgagaagaaattctgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtgtgcgacaagaacataggcttttagcaaagggtcattgctgagaagaaattctgggc 428

                                                                       
Query: 61  aagtaaatagtggttaaatggttcaattactttgaagtttcagcctcagctgccggggct 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tagtaaatagtggttaaatggttcaattactttgaagtttcagcctcagctgccggggct 368

                                                                       
Query: 121 gtcattactgtgtttctccaataagtgtgatttttacccacatgacagcttgggaatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtcattactgtgtttctccaataagtgtgatttttacccacatgacagcttgggaatcaa 308

                                                                       
Query: 181 ggagatgtgtatgagacatggcatttggaactattttagaggctttaatgacctcacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggagatgtgtatgagacatggcatttggaactattttagaggctttaatgacctcacttt 248

                                                          
Query: 241 aaaaaagtaaggtggtgttcactggcaacagaatagtatatacttat 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaaaaagtaaggtggtgttcactggcaacagaatagtatatacttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)