Query= MSMg01no194_o05.b1 MSMg01no194_o05.b1 CHROMAT_FILE:
MSMg01no194_o05.b1 PHD_FILE: MSMg01no194_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:54 2005
(494 letters)
>mm_chr1_134446228_134447121
Length = 894
Score = 893 bits (462), Expect = 0.0
Identities = 483/490 (98%), Gaps = 2/490 (0%)
Strand = Plus / Plus
Query: 6 ggaattcctctataga-acactagcccatctctgtactgggattttcatttgataaccta 64
||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcctctgtagaga-agtagcccatctctgtactgggattttcatttgataaccta 264
Query: 65 tggcttttgatcagcttcatccacccatacaggtcaaccctgttcaaactcttcgttttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggcttttgatcagcttcatccacccatacaggtcaaccctgttcaaactcttcgttttg 324
Query: 125 tttttattgcttttattttggggactgggaagatggttcagatggttcacaaggactaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttattgcttttattttggggactgggaagatggttcagatggttcacaaggactaga 384
Query: 185 gtttggactcccagaatcctcataaatttcaggcaagaatagcagtcgccggtaatggct 244
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 385 gtttggactcccagaatcctcataaatgtcaggcaagagtagcagtcgccggtaatggct 444
Query: 245 gaacttgggagacagaagcagaggatctctggggcaagccatctactcggactagttgga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaacttgggagacagaagcagaggatctctggggcaagccatctactcggactagttgga 504
Query: 305 attggtcagctccatattcaacgacagaccccgattctataaccacagcgtggagagatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attggtcagctccatattcaacgacagaccccgattctataaccacagcgtggagagatg 564
Query: 365 gggtcaggaacatggaccagggggtaaagttatttgctagtaagccacaggacctgagtt 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggtcaggaagatggaccagggggtaaagttatttgctagtaagccacaggacctgagtt 624
Query: 425 tgatccatgagacctgtgtggtggaaggatagagtcaaccccattaagttgtgcccacat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgatccatgagacctgtgtggtggaaggatagagtcaaccccattaagttgtgcccacat 684
Query: 485 acagatacac 494
||||||||||
Sbjct: 685 acagatacac 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_o05.g1 MSMg01no194_o05.g1 CHROMAT_FILE:
MSMg01no194_o05.g1 PHD_FILE: MSMg01no194_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:54 2005
(579 letters)
>mm_chr1_134535428_134536408
Length = 981
Score = 1104 bits (571), Expect = 0.0
Identities = 578/581 (99%), Gaps = 2/581 (0%)
Strand = Plus / Minus
Query: 1 aagatgctctggaaggggactagagcttgagagtcgggtacatgaagaccaagaggcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aagatgctctggaaggggactagagcttgagagtcgggtacatgaagaccaagaggcatc 722
Query: 61 actgcatcctgaaatgaagccagagcccagctggtagttaaaaggaatgtgcctaagtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 actgcatcctgaaatgaagccagagcccagctggtagttaaaaggaatgtgcctaagtgc 662
Query: 121 caggtcctgcctgtctggagactggcccc--ctctcgtgtcccctcctgtgccagctgca 178
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 661 caggtcctgcctgtctggagactggccccctctctcgtgtcccctcctgtgccagctgca 602
Query: 179 ctggctttcagtcttttttttagagtatctgttcttggcaggaaaaccacctgcaggtaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctggctttcagtcttttttttagagtatctgttcttggcaggaaaaccacctgcaggtaa 542
Query: 239 aggtgccaaagaagggagcactgcagagcctgtgttcagagtgggagcactgcagagcct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggtgccaaagaagggagcactgcagagcctgtgttcagagtgggagcactgcagagcct 482
Query: 299 tgatggctttcctttagggcttttcattcctttgtttccagcccaggcagacctggacag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgatggctttcctttagggcttttcattcctttgtttccagcccaggcagacctggacag 422
Query: 359 gtgaagagcagaatgtcccttcattactccgagggccacaccacgtagcccattaaacct 418
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 421 gtgaagagcagaatgtcccttcattactccgagggccataccacgtagcccattaaacct 362
Query: 419 ttttaaaagccataccatgaagcctttcctttgctggcagcctgcacagtggcctgctca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttaaaagccataccatgaagcctttcctttgctggcagcctgcacagtggcctgctca 302
Query: 479 ttcctgccatgattcccccttattcaagtctttctctcttctcttatgactctcttgggt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcctgccatgattcccccttattcaagtctttctctcttctcttatgactctcttgggt 242
Query: 539 ctaggtgagccccggctcccttcaggctaccctttctgtgc 579
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctaggtgagccccggctcccttcaggctaccctttctgtgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 981
Length adjustment: 10
Effective length of query: 569
Effective length of database: 971
Effective search space: 552499
Effective search space used: 552499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
