BAC Information

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BAC

Clone NameMSMg01-194P18
Chromosome1 (Build37)
Map Location 41,072,668 - 41,219,807
singlet/doubletdoublet
Overlap genenone
Upstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194P18.T7 (MSMg01no194_p18.b1)MSMg01-194P18.TJ (MSMg01no194_p18.g1)
ACCAG383692AG383693
length727730
length of high quality
(start - end)		665 (46 - 710)299 (383 - 681)
definitionCHROMAT_FILE: MSMg01no194_p18.b1 PHD_FILE: MSMg01no194_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:02 2005CHROMAT_FILE: MSMg01no194_p18.g1 PHD_FILE: MSMg01no194_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,072,668 - 41,073,329)(41,219,509 - 41,219,807)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTCTGACGAATCAGTATATTTCCAACTTCTTTGAAAAATTC
TGTGTTAAATGAAAAACACCGACCCAGTCATTTGGAGAAATTCAACTTTC
TACCTTGGTTATCAGTAGTAACACAATGGCTATGGTGTGAACCAATGAAA
CTAAACTAAACTAACTAAACTAAACTAAACAATTAAACTAAACTAAACAA
CTAAACTAAACTGAACAGAGTGGCTGGGTGAGAACTTCTAGGGGCTGGAG
TTCTGCACGAGAGACTGTGTGTTTCAGTGGTAATTTAGGTGGCCACCCGG
ATTTGGGAACTGTCTAGACCGCTAACACATTCTCTATTTATAGGTACCAT
TCGAGTTTGGTTTTGCTACCCTTAGGTGAATACCCCAGGCAAGGCTATTA
GATTCTCTAAGAATTAACAGACTGTGAAATCCGTAAGTCTGGTTATATTT
GCTCAGGGGCCTGCTTCCCACCTGGCCTCGCCATAAAGCGCACAGCTGAG
TTTATGCTCACATGGAGTCGGCCAGGGTAAGAGAGTAAGTGCCTCTCATG
CTTAACTTTCCCTTCTAAGGCATGCTACAGTCCGAAACATTGGAAGGTTC
CAGAAACAAAGAATGTGTTTTAATAACCCTTATGATACCATATTGTTATC
ATTGTGGATGGCTCGGTGGTTATGGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGACATGAAGTGACTTTTAGAAA
AATCTTTATGTGTATTGGTGTGTGCATACATGCATGTGAATGTAAAGAGT
CACACATCAGGCATTTGGAAAACTACAACTAAGATCTCCTAAACATGGCT
ACATCATACCTGCATAAACATAAGCAACACAATGTGCAACATGTAAGCAC
AAAACAGAACTGATCTCTACTGGAAGATCTAAAGAGACTTATGTGAGAAA
CATGGCCCTATTTACTGTGATTCATTCATTCATTTATTGCATTACTGGGA
TTAAACCTAGAATCTTTCTATTGACCCCCCATCAGTCTATCCATGAGTGA
TACCCACAACCCTCTTCTTAATTTTTTTTTAAAATTCAGACTCAGGTTCT
CACTAAGTTGTCGTTCAGATCATGAGCTTGTTATTCTGTGTCTGCTTCCT
GACTAGCCAGAATTGCAATCCTGTGCCACTAGGCCCAGTTTGGGTTTCCT
CTTGCATCAATCACTGGGTTTTTTGTGTACCTCTTAAACGCCCTAACCCT
CAGTTTCTGATTATTACAAAGTCATTGTGGGGCTGTGATATAAGCCTATA
AAGAACATCTCAACAGTAATCCTTCACTGGGACAAGTGGTGGAAAAACTG
GGATTGCATGAGCTGAGCTTACATTGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_p18.b1 MSMg01no194_p18.b1 CHROMAT_FILE:
MSMg01no194_p18.b1 PHD_FILE: MSMg01no194_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:02 2005
         (665 letters)



>mm_chr1_41072465_41073529
          Length = 1065

 Score = 1210 bits (626), Expect = 0.0
 Identities = 653/662 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgttctgacgaatcagtatatttccaacttctttgaaaaattctgtgttaa 63
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgttctgatgaatcagtgtatttccaacttctttgaaaaattctgtgttaa 263

                                                                       
Query: 64  atgaaaaacaccgacccagtcatttggagaaattcaactttctaccttggttatcagtag 123
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgaaaaacaccgagctagtcatttggagaaattcaactttctaccttggttatcagtag 323

                                                                       
Query: 124 taacacaatggctatggtgtgaaccaatgaaactaaactaaactaactaaactaaactaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taacacaatggctatggtgtgaaccaatgaaactaaactaaactaactaaactaaactaa 383

                                                                       
Query: 184 acaattaaactaaactaaacaactaaactaaactgaacagagtggctgggtgagaacttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaattaaactaaactaaacaactaaactaaactgaacagagtggctgggtgagaacttc 443

                                                                       
Query: 244 taggggctggagttctgcacgagagactgtgtgtttcagtggtaatttaggtggccaccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taggggctggagttctgcacgagagactgtgtgtttcagtggtaatttaggtggccaccc 503

                                                                       
Query: 304 ggatttgggaactgtctagaccgctaacacattctctatttataggtaccattcgagttt 363
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggatttgggaactgtctagactgctaacacattctctatttataggtaccattcgagttt 563

                                                                       
Query: 364 ggttttgctacccttaggtgaataccccaggcaaggctattagattctctaagaattaac 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggttttgttacccttaggtgaataccccaggcaaggctattagattctctaagaattaac 623

                                                                       
Query: 424 agactgtgaaatccgtaagtctggttatatttgctcaggggcctgcttcccacctggcct 483
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agactgtgaaatctgtaagtctggttatatttgctcaggggcctgcttcccacctggcct 683

                                                                       
Query: 484 cgccataaagcgcacagctgagtttatgctcacatggagtcggccagggtaagagagtaa 543
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 684 cgccataaagcgcacagctgagtttatgctcacatggagtcagccagagtaagagagtaa 743

                                                                       
Query: 544 gtgcctctcatgcttaactttcccttctaaggcatgctacagtccgaaacattggaaggt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtgcctctcatgcttaactttcccttctaaggcatgctacagtccgaaacattggaaggt 803

                                                                       
Query: 604 tccagaaacaaagaatgtgttttaataacccttatgataccatattgttatcattgtgga 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tccagaaacaaagaatgtgttttaataacccttatgataccatattgttatcattgtgga 863

             
Query: 664 tg 665
           ||
Sbjct: 864 tg 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no194_p18.g1 MSMg01no194_p18.g1 CHROMAT_FILE:
MSMg01no194_p18.g1 PHD_FILE: MSMg01no194_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:02 2005
         (299 letters)



>mm_chr1_41219309_41220007
          Length = 699

 Score =  571 bits (295), Expect = e-167
 Identities = 298/299 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtctatccatgagtgatacccacaaccctcttcttaatttttttttaaaattcagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagtctatccatgagtgatacccacaaccctcttcttaatttttttttaaaattcagact 440

                                                                       
Query: 61  caggttctcactaagttgtcgttcagatcatgagcttgttattctgtgtctgcttcctga 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgggttctcactaagttgtcgttcagatcatgagcttgttattctgtgtctgcttcctga 380

                                                                       
Query: 121 ctagccagaattgcaatcctgtgccactaggcccagtttgggtttcctcttgcatcaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctagccagaattgcaatcctgtgccactaggcccagtttgggtttcctcttgcatcaatc 320

                                                                       
Query: 181 actgggttttttgtgtacctcttaaacgccctaaccctcagtttctgattattacaaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 actgggttttttgtgtacctcttaaacgccctaaccctcagtttctgattattacaaagt 260

                                                                      
Query: 241 cattgtggggctgtgatataagcctataaagaacatctcaacagtaatccttcactggg 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cattgtggggctgtgatataagcctataaagaacatctcaacagtaatccttcactggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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