Query= MSMg01no196_d08.b1 MSMg01no196_d08.b1 CHROMAT_FILE:
MSMg01no196_d08.b1 PHD_FILE: MSMg01no196_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:41 2005
(316 letters)
>mm_chr1_51725188_51725903
Length = 716
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%)
Strand = Plus / Plus
Query: 5 gaattctacagagaacatggtcacagtgacacaaactcagttctgccatagactttcatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacagagaacatggtcacagtgacacaaactcagttctgccatagactttcatt 264
Query: 65 aagcataaaatagaaatggcaataaccctaatataaacagttgaatcgtcttaaaataat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcataaaatagaaatggcaataaccctaatataaacagttgaatcgtcttaaaataat 324
Query: 125 ttaactatttggggaggggcacacagagttcaagacaacgtttctccgtgtcaaggcagt 184
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 ttaactctttggggaggggcacacagagttcaagacaaggtttctccgtgtcaaggcagt 384
Query: 185 tcttgaactcactctgtagaccaggctgtcctgggactaacagagatcccgcttgcctct 244
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tcttgaactcactgtgtagaccaggctgtcctgggactaacagagatcccacttgcctct 444
Query: 245 gactcccaggtactgggattaaagatgtgcaccaccacacctgggtcattctctccttag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gactcccaggtactgggattaaagatgtgcaccaccacacctgggtcattctctccttag 504
Query: 305 gcactaaatttc 316
||||||||||||
Sbjct: 505 gcactaaatttc 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_d08.g1 MSMg01no196_d08.g1 CHROMAT_FILE:
MSMg01no196_d08.g1 PHD_FILE: MSMg01no196_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:41 2005
(560 letters)
>mm_chr1_51726513_51727471
Length = 959
Score = 986 bits (510), Expect = 0.0
Identities = 549/564 (97%), Gaps = 5/564 (0%)
Strand = Plus / Minus
Query: 1 ccagagacagaacatgtctgtaatcccagcatttggttaaaaccaagtctaagtacctca 60
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 662 ccagagacagaacatgcctgtaatcctagcatttggttaaaaccaagtctaagtacctca 603
Query: 61 gaaaggaagtggcttaatgtgaacagctccctctgaggggcgcagccatagtaacggtct 120
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 602 gaaaggaagtggcttaatgtgaacagctccctctga-gggcacagccatagtaacggtct 544
Query: 121 agtatggtttccatggcagcaacatgaaaagcaaagtttcttggtgactacagactaact 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 543 agtatggtttccatggcagcaacatgaaaagcaaagtttcttggtgactacagactaatt 484
Query: 181 tagctgttaaggaggccaatgctggcacacatagcacaagcagatcaaacatgtaggttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tagctgttaaggaggccaatgctggcacacatagcacaagcagatcaaacatgtaggttg 424
Query: 241 aacttcaaccacttctactggggatggtactcatcgagtctggggtcatatactagccag 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 423 aacttcaaccacttctactgggaatggtactcatcgagtctggggtcatatactagccag 364
Query: 301 gagaccagtgggacagcactggcttagccgcccagcttcagttgtctttgaagaaaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gagaccagtgggacagcactggcttagccgcccagcttcagttgtctttgaagaaaatgt 304
Query: 361 ctggagaatgagccacaaaggagaaaacagggactgggtagccagctgagagtcgttggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctggagaatgagccacaaaggagaaaacagggactgggtagccagctgagagtcgttggg 244
Query: 421 acagagacaaactggagaagcgggctttgtgggagatggctgtggtctttttttcttttt 480
|||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 243 acagcgacaaactggagaagcaggctttgtgggagatggctgtagtctttttttcttttt 184
Query: 481 ttaag----atttattatatgtaagtacactgtagttgtcatcagacacaccagaagagg 536
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttaagatttatttattatatgtaagtacactgtagttgtcatcagacacaccagaagagg 124
Query: 537 gcatcagatctcattacatatggt 560
||||||||||||||||| |||||
Sbjct: 123 acatcagatctcattacagatggt 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
