BAC Information

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BAC

Clone NameMSMg01-196D09
Chromosome1 (Build37)
Map Location 80,443,725 - 80,444,004
singlet/doubletsinglet
Overlap gene1700016L21Rik
Upstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899
Downstream geneDock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196D09.T7 (MSMg01no196_d09.b1)MSMg01-196D09.TJ (MSMg01no196_d09.g1)
ACCAG384413
length724724
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no196_d09.b1 PHD_FILE: MSMg01no196_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:41 2005CHROMAT_FILE: MSMg01no196_d09.g1 PHD_FILE: MSMg01no196_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXX
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGAGAGAGAGAGAGAGAGAG
ACAGAGACAGAGACAGAGACAGAGAGAGAGAGAGAGACAGAGAGAGACAG
AGAAAGGCAGAGAGACAGAGAGAAACTGCATGGTGTCTCCAAGCAGAGCT
TAAGCACAGCAATGAGTCACCTGCCAGCTTGCATCACTGCCCGAGACTCT
GCTTTCGCACCGATCCAGTCCGCCCACTCTCGACAACCCCTAAATGACTG
AGGCTGGCCCCTGGGCATTTTACTGTCTAAGAAGATTTCTCCCACCACCC
AACTTTTTCTCATCCCCACACTTACCTACTCCCTTGGCATCCTCTAAAGA
TAGCTTTCCTGATCCACTTTCTTGTTTTGGATCTGTGCTTGGGAAATTAT
GATTAAATCAGAGATTGAAATCTGGCTCCCAGAGCTTAGATCTGGCCCCT
GTGTTTGACTTTGATGGAGTTTTTCCTTTTTTTTTTTTCTAAAGTGAACA
CATCAATATTTATCAATCAGGAAATTGTGCTTAGATTATAACACCTCTTG
ACAATGGGACCTAATGGCCATGCTGTGTAACAAATGTGACTAACCCTGGT
CGGTTCTGGGTGGGGCCATGTGGGTCTGCCTATCCTCTGTTTGGCTCTGG
TAGCCTTTTGCTCCTCTGACTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_d09.g1 MSMg01no196_d09.g1 CHROMAT_FILE:
MSMg01no196_d09.g1 PHD_FILE: MSMg01no196_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:41 2005
         (287 letters)



>mm_chr1_80443519_80444205
          Length = 687

 Score =  426 bits (220), Expect = e-123
 Identities = 267/284 (94%), Gaps = 6/284 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   agagagagagagagagagagacagagacagagacagagacagagagagagagagagacag 64
           ||||||||||||||||||||| || || ||||| | ||| ||||||||||| ||||| ||
Sbjct: 207 agagagagagagagagagagagagggagagaga-a-agaaagagagagagacagagagag 264

                                                                       
Query: 65  --agagagacagagaaaggcagagagacagagagaaactgcatggtgtctccaagcagag 122
             ||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagagagac--agatagacagagagacagagagaaactgcatggtgtctccaagcagag 322

                                                                       
Query: 123 cttaagcacagcaatgagtcacctgccagcttgcatcactgcccgagactctgctttcgc 182
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 cttaagcacagcaacgagtcacctgccagcttgcatcactgcctgagactctgctttcgc 382

                                                                       
Query: 183 accgatccagtccgcccactctcgacaacccctaaatgactgaggctggcccctgggcat 242
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 accgatccagtctgcccactctcgacaacccctaaatgactgaggctggcccctgggcat 442

                                                       
Query: 243 tttactgtctaagaagatttctcccaccacccaactttttctca 286
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttactgtctaagaagatttctcccaccacccaactttttctca 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)