Query= MSMg01no196_f17.b1 MSMg01no196_f17.b1 CHROMAT_FILE:
MSMg01no196_f17.b1 PHD_FILE: MSMg01no196_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:53 2005
(543 letters)
>mm_chr1_197174557_197175499
Length = 943
Score = 777 bits (402), Expect = 0.0
Identities = 411/414 (99%), Gaps = 1/414 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttccttccctctgcatactttctccagaaccatgtagacctttttaatgtact 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggaattcttccttccctctgcatactttctccagaaccatgtagacctttttaatgtact 355
Query: 64 catatgtactgacacttactctttacaccttcttggttctgagtattgttcaaagggaac 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 catatgtactgacatttactctttacaccttcttggttctgagtattgttcaaagggaac 295
Query: 124 ttcacagcttttagtgttctgtaaatattatcccatgcttatagttatttcacacttaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttcacagcttttagtgttctgtaaatattatcccatgcttatagttatttcacacttaag 235
Query: 184 ttctaagtggagacagagagatgactccagtagaggacacaggtccacttcccagcacca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttctaagtggagacagagagatgactccagtagaggacacaggtccacttcccagcacca 175
Query: 244 aaatgcctgctcacaatcacctgtagttccagttttaggggaactacgcattcttatgac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aaatgcctgctcacaatcacctgtagttccagttttaggggaactacgcattcttatgac 115
Query: 304 ctaaagggtctcctgttcatacatgtggtgcatgtacatacacggaggcacacacataca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctaaagggtctcctgttcatacatgtggtgcatgtacatacacggaggcacacacataca 55
Query: 364 cacgac-ttttttttaaagttctaatataattggggtggatttactgtcaagag 416
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 54 cacgacttttttttttaagttctaatataattggggtggatttactgtcaagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_f17.g1 MSMg01no196_f17.g1 CHROMAT_FILE:
MSMg01no196_f17.g1 PHD_FILE: MSMg01no196_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:53 2005
(536 letters)
>mm_chr1_197110515_197111450
Length = 936
Score = 1029 bits (532), Expect = 0.0
Identities = 532/532 (100%)
Strand = Plus / Plus
Query: 3 ttgagtatttttgcatcaatattcataagcaagattggtctgaagttcttctttttggtt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttgagtatttttgcatcaatattcataagcaagattggtctgaagttcttctttttggtt 262
Query: 63 gggtccttgtgtggtttaggtgtcagagtaattgtggcttcatagaatgagttaggtagt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gggtccttgtgtggtttaggtgtcagagtaattgtggcttcatagaatgagttaggtagt 322
Query: 123 gttccttagcatctaaaacatataaaaatctcaagaagttttccttcacaaaaccaaaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gttccttagcatctaaaacatataaaaatctcaagaagttttccttcacaaaaccaaaca 382
Query: 183 atccaatcaaaaagttaggtttagagcttaatagagaattcacaacagaggaattttgaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atccaatcaaaaagttaggtttagagcttaatagagaattcacaacagaggaattttgaa 442
Query: 243 tggccaagatgcacttaaataaatgtttaaagtccttagtccatttatttgttttctata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggccaagatgcacttaaataaatgtttaaagtccttagtccatttatttgttttctata 502
Query: 303 gatttctccatttcctatccatgccttttcttcttgagacccctttgacctttatcctta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatttctccatttcctatccatgccttttcttcttgagacccctttgacctttatcctta 562
Query: 363 atgttactaagttcatcctagttaattaatgcagtggtctttggatgaggagtgttcata 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgttactaagttcatcctagttaattaatgcagtggtctttggatgaggagtgttcata 622
Query: 423 tatcgtctcataattctaaattcaagcccaagactgagaatgaactatttctacaaagga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatcgtctcataattctaaattcaagcccaagactgagaatgaactatttctacaaagga 682
Query: 483 ccatgtacaattttatgacctctgtggttgttatctagattgcttcctgtgg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccatgtacaattttatgacctctgtggttgttatctagattgcttcctgtgg 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
