BAC Information

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BAC

Clone NameMSMg01-196G12
Chromosome1 (Build37)
Map Location 6,582,517 - 6,583,119
singlet/doubletsinglet
Overlap genenone
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196G12.T7 (MSMg01no196_g12.b1)MSMg01-196G12.TJ (MSMg01no196_g12.g1)
ACCAG384532AG384533
length739743
length of high quality
(start - end)
606 (45 - 650)590 (77 - 666)
definitionCHROMAT_FILE: MSMg01no196_g12.b1 PHD_FILE: MSMg01no196_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:57 2005CHROMAT_FILE: MSMg01no196_g12.g1 PHD_FILE: MSMg01no196_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCTGTTTTCCTGTTGGTAATAATAACCGTATCTATCAGGTGGTGG
TGGCACAAGCCTTTAATCCCAGGAGAGGCAGGTGGAGTCAACCCAGCCTT
GTCTTCAGAGTAAGTTCTAGGACATCCAGGGCTATACAAAGAAACCTTGT
CTTGAAAACAATAACAACAGCAACAAAATAATAAGAATATCTCCATCCTT
AACTTTTTGAAGAGTCTAGATGAATTTTAATGTTGGAAAATGTTGTAACT
CCTTGTTAAAGCTAATGCTTCAAGTCTGGCTGGGCACACACAACCTGGCT
AGATGCCAAAAGATGAAATTGTTTTTACAAATCAATGTTGAGCTCCAAAG
CAAATTTTCAATATTCTGTTGCCTCTACTATGAGTTAATAGGCATATGAA
AAAGACTTTAGCTCTAAGGAGCCCAACCACCTTCTGTGTAAAATAACCTC
ACACCATGCTACTTAACACTTTAAAGCAGAATTAACACAGGGTTAAAGGC
AATGCAACGCAACTCACAGAAAACAGCAGTGGTAAAACATTATTTGGCAA
ATTATTTAAGTGCTTCTAATGCCAATATCAAAGGGTGAGAAAACTTAATA
GGCGTGGGAAGAGAAGAGCAATTAAAGGTGTCCGAAAATCCTTAAAATGA
GTAACATTCCGTCCACTAAAATAAAACTAGGGAAGAGTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGTAATACCAAATGGCT
GAGAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGAGAAATGC
AAATCAAAACAACCCTGAGATTTCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAAATGCTGGCGAGGATGTGGAGAAAAAGG
AACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTTAAAAAATTGGACATAGTACTACTGGAGGAT
CCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAA
GAAGGACACCTGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGAATACAGAAA
ATGTGGTACATTTACACACTGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGCATATCATCCTGA
GTGAGGTAACCCAATCACAAAAGAACTCACATGATATGTACTCACTGATA
AGTGTATATTAGCCCAGAAACAGAATACCCAAGATACAAGTTGCCAAACA
CATGAAACTTCTGAAGAACGAAGACCCAAGTGTGCACACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_g12.b1 MSMg01no196_g12.b1 CHROMAT_FILE:
MSMg01no196_g12.b1 PHD_FILE: MSMg01no196_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:57 2005
         (606 letters)



>mm_chr1_6582314_6583319
          Length = 1006

 Score = 1143 bits (591), Expect = 0.0
 Identities = 600/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagctgttttcctgttggtaataataaccgtatctatcaggtggtggtggcaca 63
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattcagctgttttcctgttggtaataataaccatatctatcaggtggtggtggcaca 263

                                                                       
Query: 64  agcctttaatcccaggagaggcaggtggagtcaacccagccttgtcttcagagtaagttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcctttaatcccaggagaggcaggtggagtcaacccagccttgtcttcagagtaagttc 323

                                                                       
Query: 124 taggacatccagggctatacaaagaaaccttgtcttgaaaacaataacaacagcaacaaa 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 taggacatccagggctatacaaagaaatcttgtcttgaaaacaataacaacagcaacaaa 383

                                                                       
Query: 184 ataataagaatatctccatccttaactttttgaagagtctagatgaattttaatgttgga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 ataataagaatatctccatccttaactttttgaagagtctagatgaattttcatgttgga 443

                                                                       
Query: 244 aaatgttgtaactccttgttaaagctaatgcttcaagtctggctgggcacacacaacctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaatgttgtaactccttgttaaagctaatgcttcaagtctggctgggcacacacaacctg 503

                                                                       
Query: 304 gctagatgccaaaagatgaaattgtttttacaaatcaatgttgagctccaaagcaaattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctagatgccaaaagatgaaattgtttttacaaatcaatgttgagctccaaagcaaattt 563

                                                                       
Query: 364 tcaatattctgttgcctctactatgagttaataggcatatgaaaaagactttagctctaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcaatattctgttgcctctactatgagttaataggcatatgaaaaagactttagctctaa 623

                                                                       
Query: 424 ggagcccaaccaccttctgtgtaaaataacctcacaccatgctacttaacactttaaagc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggagcccaaccaccttctgtgtaaaataacctcacaccatgctacttaacactttaaagc 683

                                                                       
Query: 484 agaattaacacagggttaaaggcaatgcaacgcaactcacagaaaacagcagtggtaaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agaattaacacagggttaaaggcaatgcaacgcaactcacagaaaacagcagtggtaaaa 743

                                                                       
Query: 544 cattatttggcaaattatttaagtgcttctaatgccaatatcaaagggtgagaaaactta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cattatttggcaaattatttaagtgcttctaatgccaatatcaaagggtgagaaaactta 803

              
Query: 604 ata 606
           |||
Sbjct: 804 ata 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)