BAC Information

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BAC

Clone NameMSMg01-196J05
Chromosome1 (Build37)
Map Location 43,710,835 - 43,799,524
singlet/doubletdoublet
Overlap gene1500015O10Rik
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
Downstream geneUxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196J05.T7 (MSMg01no196_j05.b1)MSMg01-196J05.TJ (MSMg01no196_j05.g1)
ACCAG384639AG384640
length736737
length of high quality
(start - end)
371 (45 - 415)487 (77 - 563)
definitionCHROMAT_FILE: MSMg01no196_j05.b1 PHD_FILE: MSMg01no196_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:10 2005CHROMAT_FILE: MSMg01no196_j05.g1 PHD_FILE: MSMg01no196_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,710,835 - 43,711,198)(43,799,038 - 43,799,524)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCTTACTGACACTCTCTCACATTCATGTTCAGCTACGGCTCTTAC
AACCCAGACCTGTCTACCCAGATGTTGTTCCCTTTCACTTCAATTAGCAA
TCAGTAAAGGACCCACCCATCAGAGAAATCTGGGGACAAGTCCTCACTTG
AGGTCCCCTCTTCTGAGGTGTATTGATAACTAGAATAAGCCACTATGACT
AGTGTATTTGCCAACTTTCTATTGTTGTAAGAAAATAATTTAGTCATCTT
AAATGGATGGAAGATTTATTTTGGTTCATGGTCTTGGAAGTTTTATCCCA
TGGTGATATTGACTCTATTGAGGTTGTGGAGAGACAGCATGTTATGAGAA
GAGAGTGCGTGCCCCAAAGCATGGATGGTTACCTCATTACAATTAGGAGA
AAGAAGAGACCTTGGCTCATATTCCCTTTCAAAGTCACAACCTTACTGAT
CTAATACATTCCGAAATATTCCACCTTTTATAGGCGCCACCACCTTCTAA
TAGCATTTCAGGCCTATAGGGGCCATTTTAGTCACGTAGTATGCTATTTT
GGGTGTTTACATTATGACTGTATTTACCCCTGTGAGCTTTTGAATCTGAC
GATCATTTTTTGATCTTGTTATCATGTTCTATTCCCCCTCTTTGTTTGGC
ACTTTCATGTATTTTTTCTCCCTGTCGACTTTTGCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAAGAAAATATAGAGGCCCTC
AGATGATATGCTAACTTCAAAAATGGAGGCGATTAGAATTGTCATGGCTC
AGTTTTCTCCCAAGTGAATTCTGATGCTTCTCTCTTTTTTTAAATGCTTT
TATTTCTATTTTTAAGTGAGACATATCGTTAAGCACATGCATGAAATGCA
AAAAGCACTTATATTCTTTCCTTTAGCCTGATGGTCACGTGGTATAGGTA
GAGAAGGCCTACTGAAGCAGGCACAAGCTCTGTGGGCACCTCAGGAAGCT
TAATAGTCATCATAGTTGACACTGGCTCCATGCCTGAAGCTTTCCCGGCT
GTGGGGACCAATGGCCGCATCTTCATCATAATGACGCTGGTAGTAGTCAC
CATAGTAGTCATGGCCGTTTCGATTTCTGTTTAGCCAATAGTTGACATCA
TCTTCAAATTTCTGTAGAAAAAGAGAATGTTAAAGGATGGTTTTGAAGAC
ACATAATCCTCAAAAACACACTGAAACTATGGCTTTTCTCTACGTAGTTT
TTCTCAGTGATTGAGAATCTATATCATAGTAGGACAGCTGCTCGTTATAA
TGTTCTCTTCCCTGGTCAATTCATGATCTTAGGATACCAGCATGTTCACT
AAAAAAAGCTGTGTCTGCGGTTTTGGACATTTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_j05.b1 MSMg01no196_j05.b1 CHROMAT_FILE:
MSMg01no196_j05.b1 PHD_FILE: MSMg01no196_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:10 2005
         (371 letters)



>mm_chr1_43710632_43711402
          Length = 771

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgcttactgacactctctcacattcatgttcagctacggctcttacaacccag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcttactgacactctctcacattcatgttcagctacggctcttacaacccag 263

                                                                       
Query: 64  acctgtctacccagatgttgttccctttcacttcaattagcaatcagtaaaggacccacc 123
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acctgtctacacagaggttgttccctttcacttcaattagcaatcagtaaaggacccacc 323

                                                                       
Query: 124 catcagagaaatctggggacaagtcctcacttgaggtcccctcttctgaggtgtattgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catcagagaaatctggggacaagtcctcacttgaggtcccctcttctgaggtgtattgat 383

                                                                       
Query: 184 aactagaataagccactatgactagtgtatttgccaactttctattgttgtaagaaaata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aactagaataagccactatgactagtgtatttgccaactttctattgttgtaagaaaata 443

                                                                       
Query: 244 atttagtcatcttaaatggatggaagatttattttggttcatggtcttggaagttttatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttagtcatcttaaatggatggaagatttattttggttcatggtcttggaagttttatc 503

                                                                       
Query: 304 ccatggtgatattgactctattgaggttgtggagagacagcatgttatgagaagagagtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccatggtgatattgactctattgaggttgtggagagacagcatgttatgagaagagagtg 563

               
Query: 364 cgtg 367
           ||||
Sbjct: 564 cgtg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no196_j05.g1 MSMg01no196_j05.g1 CHROMAT_FILE:
MSMg01no196_j05.g1 PHD_FILE: MSMg01no196_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:10 2005
         (487 letters)



>mm_chr1_43798838_43799724
          Length = 887

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggaagaaaatatagaggccctcagatgatatgctaacttcaaaaatggaggcgattag 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 687 ctggaagaaaatatagaggccctcagatgatgtgctaacttcaaaaatggaggcgattag 628

                                                                       
Query: 61  aattgtcatggctcagttttctcccaagtgaattctgatgcttctctctttttttaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aattgtcatggctcagttttctcccaagtgaattctgatgcttctctctttttttaaatg 568

                                                                       
Query: 121 cttttatttctatttttaagtgagacatatcgttaagcacatgcatgaaatgcaaaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cttttatttctatttttaagtgagacatatcgttaagcacatgcatgaaatgcaaaaagc 508

                                                                       
Query: 181 acttatattctttcctttagcctgatggtcacgtggtataggtagagaaggcctactgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acttatattctttcctttagcctgatggtcacgtggtataggtagagaaggcctactgaa 448

                                                                       
Query: 241 gcaggcacaagctctgtgggcacctcaggaagcttaatagtcatcatagttgacactggc 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 447 gcaggcacaagctctgtgggcacctcaggaagcttaatagtcattatagttgacactggc 388

                                                                       
Query: 301 tccatgcctgaagctttcccggctgtggggaccaatggccgcatcttcatcataatgacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tccatgcctgaagctttcccggctgtggggaccaatggccgcatcttcatcataatgacg 328

                                                                       
Query: 361 ctggtagtagtcaccatagtagtcatggccgtttcgatttctgtttagccaatagttgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctggtagtagtcaccatagtagtcatggccgtttcgatttctgtttagccaatagttgac 268

                                                                       
Query: 421 atcatcttcaaatttctgtagaaaaagagaatgttaaaggatggttttgaagacacataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atcatcttcaaatttctgtagaaaaagagaatgttaaaggatggttttgaagacacataa 208

                  
Query: 481 tcctcaa 487
           |||||||
Sbjct: 207 tcctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)