NNCCATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGTACCTCTGTCTGGATCCATGAGGAGTTGGAAACA
TATTTTAAATCTATAATAGCAAATTGTTGTCTCGTGTCAAAATAAACCAT
ATTTCTGCTTAAGCTTCTCATTGTGGAAATACCCAAGAAAGATCAAATTC
AGAATTTCCAGCAGATAGTGTTCAATGAAGACAGTTTCACTGAAAGTCCA
TTTCAAAAAATGTTCTTAGCAAAGAGAACTTGGCCATCCTAAAACAATGG
CTATGATGGACTTTCCTTTTCTCTGCAATCATTACACTGCTAAAAGTTTC
TCCAAAACTATAAAGGAAAAAGAAAAGCACTCATCCCAGAATGCATGGGT
AGATGTCTGGGAACAAGAGCCTTGATAAAAATTTGTCATAGACAAAACAA
TTTCATAAAAAGCAAACAAATACATTAAAATTATTAATATATTAAGAACA
TTTATTTTCTGCAACATATAGGCTCTTGTGTTTCAAATGTTCTACTATAT
AAATTTCTTATAGCAAAGAATATCAGCTCTAAATATGAGATAATTTGCAT
GATGTGTCTTTATCTTCAATGCATTGTTACAGCACTTAGAAGTCTCATAT
CTAACTATCTTTAAAAAATTGTTGTCCCTGAAATGACAATTATACTACTA
TATCTACAGTTTCTGGAATGGGAAACCTATGCCCATGCTGTGGGTATACC
TTTATCAATG

NNNNCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTTAGTTCTGTA
CTCCATTTTTTTCATTGGGTGGTTTGGTTTTACACGGTGGTTAGCTTCTT
GAATTCTTTATATATTTTGTGTATAATCCATCTATCAGATGAGAGATTAG
TGAAGACTTTTTTCCCAATCTGTAGGTTGCTGATTTGTCTTATTGACAAT
GTACTTGGCCTTAAAGAAGCTTTCCAGTTTCATGATGTCTCATTGATCAA
TTCTTAGTCTTAGATAGTGAGCCATTGGATTCTGTTTTGGAAATTTCCCC
CCGCGACAGTAAGTTTAAGTCTTTTTCCCCCGACTTTCCCTTCTATTAAA
TTCAGTGTATCTTGCTTTATGCTGACCCCCTTGAAGAAAATGAACTTGAT
CTTTGTACCCTGTGACCAGTATGTATCCATTCTCTTTTTCCTTTCTTCCT
ATTTTCTGTTACACCCTCCCAACTTATTGAATTCCGTTCCCTCTATCCCC
CCGCATTTTTCCTGTTTTTTTTTTTATTGATTCCCTCCCCCACCATTTTC
CCTACCCATTTTCCGATTTTACCTCCATTTCCTCCTTTTTTCCCTTTTCT
TTCCCCCCTTTTTCCCTTTTTACGCCCTCCCTTCCCATCTTTCTTCCCAC
TTCTCCTCCTCCTTTTCACCTCCCCCTTTCCTCCCTTTTTTTTTCCTTCT
TCTTTTCCTTT

Query= MSMg01no196_m17.b1 MSMg01no196_m17.b1 CHROMAT_FILE:
MSMg01no196_m17.b1 PHD_FILE: MSMg01no196_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:28 2005
         (565 letters)



>mm_chr1_118533270_118534234
          Length = 965

 Score = 1071 bits (554), Expect = 0.0
 Identities = 560/562 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtacctctgtctggatccatgaggagttggaaacatattttaaatctataa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtacctctgtctggatccatgaggagttggaaacatattttaaatctataa 263

                                                                       
Query: 64  tagcaaattgttgtctcgtgtcaaaataaaccatatttctgcttaagcttctcattgtgg 123
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 tagcaaattgttttctcgtgtcaaaataaaccatatttctgcttaagcgtctcattgtgg 323

                                                                       
Query: 124 aaatacccaagaaagatcaaattcagaatttccagcagatagtgttcaatgaagacagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatacccaagaaagatcaaattcagaatttccagcagatagtgttcaatgaagacagtt 383

                                                                       
Query: 184 tcactgaaagtccatttcaaaaaatgttcttagcaaagagaacttggccatcctaaaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcactgaaagtccatttcaaaaaatgttcttagcaaagagaacttggccatcctaaaaca 443

                                                                       
Query: 244 atggctatgatggactttccttttctctgcaatcattacactgctaaaagtttctccaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atggctatgatggactttccttttctctgcaatcattacactgctaaaagtttctccaaa 503

                                                                       
Query: 304 actataaaggaaaaagaaaagcactcatcccagaatgcatgggtagatgtctgggaacaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actataaaggaaaaagaaaagcactcatcccagaatgcatgggtagatgtctgggaacaa 563

                                                                       
Query: 364 gagccttgataaaaatttgtcatagacaaaacaatttcataaaaagcaaacaaatacatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagccttgataaaaatttgtcatagacaaaacaatttcataaaaagcaaacaaatacatt 623

                                                                       
Query: 424 aaaattattaatatattaagaacatttattttctgcaacatataggctcttgtgtttcaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaattattaatatattaagaacatttattttctgcaacatataggctcttgtgtttcaa 683

                                                                       
Query: 484 atgttctactatataaatttcttatagcaaagaatatcagctctaaatatgagataattt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgttctactatataaatttcttatagcaaagaatatcagctctaaatatgagataattt 743

                                 
Query: 544 gcatgatgtgtctttatcttca 565
           ||||||||||||||||||||||
Sbjct: 744 gcatgatgtgtctttatcttca 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)