Query= MSMg01no196_m18.b1 MSMg01no196_m18.b1 CHROMAT_FILE:
MSMg01no196_m18.b1 PHD_FILE: MSMg01no196_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:28 2005
(418 letters)
>mm_chr1_181223025_181223845
Length = 821
Score = 714 bits (369), Expect = 0.0
Identities = 404/418 (96%), Gaps = 5/418 (1%)
Strand = Plus / Minus
Query: 5 gaattcatttagactactgacaagttaactctggctttcataatactggcttgtgatttc 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gaattcatttagacaactgacaagttaactctggctttcataatactggcttatgatttc 562
Query: 65 tgttcttgcttatctctttacatttacaaacacttaagtgatacttgagttgagaccaat 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcttgcttatct-tttacatttacaaacacttaagtgatacttgagttgagaccaat 503
Query: 125 ggaatctgatttaagagatagcggttgagttgtaatttgctcataatggagagattgccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggaatctgatttaagagatagcggttgagttgtaatttgctcataatggagagattgccc 443
Query: 185 cgagaacgtccagcacattaggggagtctttgaaggtttaaattaaatttgggggagatt 244
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 442 tgagaacgtccagcacattaggggagtctttgaaggtttaaattaactttgggggagatt 383
Query: 245 tgacttggacaccagtacagatcctgataccgcaggccaataggagctgtagtttcttgt 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 382 tgacttggacaccagtacagatcctgataccacaggccaataggagctgtagtttcttgt 323
Query: 305 aactgcacaccatgccagaggaaatgtcagagtttttctttgcttaggtttcttttcctc 364
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 322 aactgcacactatgccagaggaaacgtcagagtttttctttgcttaggtttcttttcctc 263
Query: 365 ttcatcngcgctggttagcaca----gtcggtgcgtcttccctttcaccctggagctt 418
|||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 262 ttcatctgtgctggttagcacaaacagtcggtgcgtcttccctttcaccctggagctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 821
Length adjustment: 9
Effective length of query: 409
Effective length of database: 812
Effective search space: 332108
Effective search space used: 332108
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_m18.g1 MSMg01no196_m18.g1 CHROMAT_FILE:
MSMg01no196_m18.g1 PHD_FILE: MSMg01no196_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:28 2005
(482 letters)
>mm_chr1_181171732_181172608
Length = 877
Score = 855 bits (442), Expect = 0.0
Identities = 470/482 (97%), Gaps = 5/482 (1%)
Strand = Plus / Plus
Query: 1 aaggtatctactacatttcagaaataaagaaggcttgcaggactagattataaaggggca 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggcatctactacatttcagaaataaagaaggcttgcaggactagattataaaggggca 260
Query: 61 atgaatccaccagggttggcaaccacgacccaagggacattagagaaactgtatggtctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaatccaccagggttggcaaccacgacccaagggacattagagaaactgtatggtctc 320
Query: 121 cagtgttcctacagagaaaggcaaagtgcaaaggcatggataggagggggtagcacttta 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 cagtgttcctacagagaaaggcaaagtgcaaaggcatggataagagggggtagcacttta 380
Query: 181 aaaacaaatcccctgctcatgatcattagatggaaatgcagtagctctgaaaagggttcc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aaaacaaatcccctgctcatgatcattagatggaaatacagtagctctgaaaagggttcc 440
Query: 241 acttttgggaactcctctgtcactgcaaagggtaactaacactctactatgtcccttatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttgggaactcctctgtcactgcaaagggtaactaacactctactatgtcccttatc 500
Query: 301 cacctgagtcaggcatcaccacctgtcctttcacagtcaggctgagagcttctctgtcag 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 cacctgagtcaggcatcaccacctgtcctttcacagtcaggctgagagcctctctgtcag 560
Query: 361 ctcctatggatctggtgcttcagtgtgatgatcatgtgtcagaatgaagagtagcagaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcctatggatctggtgcttcagtgtgatgatcatgtgtcagaatgaagagtagcagaca 620
Query: 421 aaagatggggggggaggaagaatcctgaatctacaggttaatcccactaattattctgtt 480
|||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||
Sbjct: 621 aaagatgggggg-----aagaatcctgaatctacaggtgaatcccgctaattgttctgtt 675
Query: 481 ct 482
||
Sbjct: 676 ct 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 877
Length adjustment: 10
Effective length of query: 472
Effective length of database: 867
Effective search space: 409224
Effective search space used: 409224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
