Query= MSMg01no196_m24.b1 MSMg01no196_m24.b1 CHROMAT_FILE:
MSMg01no196_m24.b1 PHD_FILE: MSMg01no196_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:29 2005
(571 letters)
>mm_chr1_70110847_70111820
Length = 974
Score = 969 bits (501), Expect = 0.0
Identities = 553/571 (96%), Gaps = 3/571 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttgatgtatggcgattctgttaggaacaaataacaaagcaggcttttcctgag 63
|||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattcttgttgtatggagattctgttaggaacaaataacaaagccggcttttcctgag 263
Query: 64 gtaaccagggtaagatgatactactgtctttaaggtttcagtaagtcaattctgaactgt 123
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 gtaaccagggtaagatgatactactgtctttgaggtttcagtaagtcaattctgaactgt 323
Query: 124 cttccaaaacctaaggaaaaagatgtttctacaatgtttctcccaaaaagttgatttttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttccaaaacctaaggaaaaagatgtttctacaatgtttctcccaaaaagttgatttttt 383
Query: 184 tttttg-gtggagtattggtttaaaaaa--tcacttagttactaagatattctcaaataa 240
||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 tttttttgtcgagtattggtttaaaaaaaatcacttagttactaagatattctcaaataa 443
Query: 241 acaaagagaagaaaatgtgccttttacagccgaaatatggttggaattattttcttctgt 300
||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 444 acaaagagaaggaaatgtgccttttacagccaaaatatggttggaattattctcttctgt 503
Query: 301 tcccatatgttatagtctagctcttattatgctagttaagtgtattcttctctaagaagg 360
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcccatatgttatagcctacctcttattatgctagttaagtgtattcttctctaagaagg 563
Query: 361 ttgtgagtcaccaaaatacagagctcatgctatttttctctgttttcagaaatgtaaagc 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgtgagtcaccaaaatacagatctcatgctatttttctctgttttcagaaatgtaaagc 623
Query: 421 tcattactttccaaatggactttttcaatgaaggcttgatgatagcaagaaaattaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcattactttccaaatggactttttcaatgaaggcttgatgatagcaagaaaattaattt 683
Query: 481 tgtaggtcattttgctgtatgtgaggcatatatgtcccttgtgtctgcaactaagaaaaa 540
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 684 tgtaggtcattttgctctatgtgaggcatatatgtcccttgtgtctacaactcagaaaaa 743
Query: 541 aaaatcacccagtttagcaatcaaagtagaa 571
|||||||||||||||||||||||||||||||
Sbjct: 744 aaaatcacccagtttagcaatcaaagtagaa 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 974
Length adjustment: 10
Effective length of query: 561
Effective length of database: 964
Effective search space: 540804
Effective search space used: 540804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_m24.g1 MSMg01no196_m24.g1 CHROMAT_FILE:
MSMg01no196_m24.g1 PHD_FILE: MSMg01no196_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:29 2005
(514 letters)
>mm_chr1_70241326_70242240
Length = 915
Score = 934 bits (483), Expect = 0.0
Identities = 507/515 (98%), Gaps = 1/515 (0%)
Strand = Plus / Minus
Query: 1 cttgaaaattttcatattaaagggataactgaagaaaatattcag-aaaaaaaaactaac 59
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 632 cttgaaaattttcatattaaagcgataactgaagaaaatattcagaaaaaaaaaactaac 573
Query: 60 caagtcctcttgaaggacacagttattatattaactaagaataaaagtatgtgtgtgttc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 caagtcctcttgaaggacacagttattatattaactaagaataaaagtatgtgtgtgttc 513
Query: 120 ttttatccaggtatgcagagaacattaagatagtgaagaatagtgctttagaaaaaaaat 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 512 ttttatccaggtatgcagagaacattaagatagtgaagaatagtgctttagaaaaaaatt 453
Query: 180 gttcaggaaatggtaaaagagttctgagactgaattccagatgagaatattgagtcatgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gttcaggaaatggtaaaagagttctgagactgaattccagatgagaatattgagtcatgg 393
Query: 240 catggcattgaaagaatataggaatgaattatagaaacatctgatagtttgggtattagt 299
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 392 catggcattgaaagaatataggaatgaattatagaaacatatgatagtttgggtattaat 333
Query: 300 agttttaaattataatcacacctaatctctgatacagtgttaagtcaccagcaatgcttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agttttaaattataatcacacctaatctctgatacagtgttaagtcaccagcaatgcttg 273
Query: 360 ttagatttgaatagttttgatcatgcaagatggaacctggaccacatcgtagagttaaaa 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 272 ttagatttgaatagttttgatcatgcaagatggaacctggaccacatcatagagttaaaa 213
Query: 420 ggtaatgtgtgaagccgggcagtggtggtgcacgtctttaatcccagcacttgggaggca 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 212 ggtaatgtgtgaagccgggcagtggtggtgcacgcctttaatcccagcacttgggaggca 153
Query: 480 gaggcaagcagatttctgagttcgaggccagcctg 514
|||||||| ||||||||||||||||||||||||||
Sbjct: 152 gaggcaagaagatttctgagttcgaggccagcctg 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space: 456120
Effective search space used: 456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
