BAC Information

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BAC

Clone NameMSMg01-196P05
Chromosome1 (Build37)
Map Location 148,894,305 - 149,041,174
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196P05.T7 (MSMg01no196_p05.b1)MSMg01-196P05.TJ (MSMg01no196_p05.g1)
ACCAG384869AG384870
length740737
length of high quality
(start - end)		329 (46 - 374)572 (77 - 648)
definitionCHROMAT_FILE: MSMg01no196_p05.b1 PHD_FILE: MSMg01no196_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:39 2005CHROMAT_FILE: MSMg01no196_p05.g1 PHD_FILE: MSMg01no196_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,040,850 - 149,041,174)(148,894,305 - 148,894,876)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGACCTCTC
TTCCCTGTGATGGCAAACTAGTTGGCCTAGGCTCTTATTGCTTGTTTGCT
TCCTAGAAAAAGTTGACTGAGATCAGGAACTTGCCTTTTCTTTTTTGTTT
TTGTTTTTGTTTTTTCCCTCTTGGTAACCTTCTTCTTCCTCTCCAGACCA
ACTGTTACATGCTCTACTACTTCTAGATCTTTTTCCTATTCAGAATCTGA
AGCTACTCCGCTCATTTTTGTAAGACCATCATGTGTCAATTCAGTCTTCT
TTACCTATTACTATTTCATCCCACCCCACTACTGGTATTATAAGCTGACA
GAAAAGATCATTCCACCACCCAGGAAGAGTCTTCGATTGGGCCTAAGGTC
ACAACAGCATTAGGGGTAGCACAGAAGGTTATTGCCTGGCTGACTCCTAA
TCTAAGCCAGACAGGTTTATCACACAGTCAGCATAGACACATGTATTAGC
TATGTACTGTGAATGCTGTTTTGTAACTTGTACTCTTTCTACTATGATTC
TTATTTTTATAACTCCGTTTTTTAATTCTTTTTTAACGACCGTTTTCTAC
GCTCATTTCTTTCTACTCTCTTCTTTACCCCCTCTAAATTTTTGTCTTTT
TCCCCTACCCCCCCACTTTTCTACTTCCTCCACCTCTCTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGAAAAGAATGAGGAATGTAGA
TAATTGTGCTATGCTCACAGTTATAACTCGTGTTGGGTATAGTCTATTTC
AAATTACTCTAATGTAATGTTGCACTCTATTTCCTGTCTGATGTTTTCTT
TCTATGCATTTCTAAATGTCCCTGCTTAACAATTGTAAATTGAATTGTAA
GGTAACGGCATAATTCAGTTTTACTGGAAGTCAATTAACTCTGCATGACA
CTTGAGAAAATTTGGCTTATACAATTGTAATTTCAGAAAATAAAAAGTTT
CACTTTTGTTCAGAAAGAGTGGCCAACAAAGGGGCCGTTATTACAGAAGA
GTTTGTTTGGGGCTACAACCTTGCAAAAAAGGCAAATAATCGCTTCTGTG
CTTTACATTGTTGACTTAAAAGTATCCCCTAGCCTGGGAACTTTCTACTA
AATCATGTAGCATGTTCAATGATTTGGGCGACTTTAGGGATTGCTGTTTT
ATAAAGGATTAAACCACTGATGACTTTAGCTTTTAACCTCAGTCATAAAA
TACAAGTACTCTTCTATATCCCTACAATTTAAATGCCAATAGTCTTTAAT
CAAAGCTAATCTTGAGGGCTTTGGTATAGTGAATGATAAATGGAATTTTT
TCTTATTTCTTTTTCCCACTACTTATCTTTTGTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_p05.b1 MSMg01no196_p05.b1 CHROMAT_FILE:
MSMg01no196_p05.b1 PHD_FILE: MSMg01no196_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:39 2005
         (329 letters)



>mm_chr1_149040481_149041209
          Length = 729

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccctgtactggggcatataaagtttgcaataccaagggacctctcttccctgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggaattcccctgtactggggcatataaagtttgcaataccaagggacctctcttccctgt 635

                                                                       
Query: 64  gatggcaaactagttggcctaggctcttattgcttgtttgcttcctagaaaaagttgact 123
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 634 gatggcaaactagttggcctaggctcttattacttgtttgcttcctagaaaaagttgact 575

                                                                       
Query: 124 gagatcaggaacttgccttttcttttttgtttttgtttttgttttttccctcttggtaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gagatcaggaacttgccttttcttttttgtttttgtttttgttttttccctcttggtaac 515

                                                                       
Query: 184 cttcttcttcctctccagaccaactgttacatgctctactacttctagatctttttccta 243
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 514 cttcttcttcctctccagaccaactgttacatgttctactacttctagatcttttttcta 455

                                                                       
Query: 244 ttcagaatctgaagctactccgctcatttttgtaagaccatcatgtgtcaattcagtctt 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttcagaatctgaagctactctgctcatttttgtaagaccatcatgtgtcaattcagtctt 395

                                    
Query: 304 ctttacctattactatttcatccca 328
           |||||||||||||||||||||||||
Sbjct: 394 ctttacctattactatttcatccca 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no196_p05.g1 MSMg01no196_p05.g1 CHROMAT_FILE:
MSMg01no196_p05.g1 PHD_FILE: MSMg01no196_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:39 2005
         (572 letters)



>mm_chr1_148894105_148895076
          Length = 972

 Score = 1075 bits (556), Expect = 0.0
 Identities = 568/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaaaagaatgaggaatgtagataattgtgctatgctcacagttataactcgtgttgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tatgaaaagaatgaggaatgtagataattgtgctatgctcacagttataacttgtgttgg 260

                                                                       
Query: 61  gtatagtctatttcaaattactctaatgtaatgttgcactctatttcctgtctgatgttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gtatagtctatttcaaattactctaatgtaatgttgcactctatttcctgcctgatgttt 320

                                                                       
Query: 121 tctttctatgcatttctaaatgtccctgcttaacaattgtaaattgaattgtaaggtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttctatgcatttctaaatgtccctgcttaacaattgtaaattgaattgtaaggtaac 380

                                                                       
Query: 181 ggcataattcagttttactggaagtcaattaactctgcatgacacttgagaaaatttggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ggcataattcagttttactggaagtcaattaactctgcatgacacttgagaaaatttggt 440

                                                                       
Query: 241 ttatacaattgtaatttcagaaaataaaaagtttcacttttgttcagaaagagtggccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatacaattgtaatttcagaaaataaaaagtttcacttttgttcagaaagagtggccaa 500

                                                                       
Query: 301 caaaggggccgttattacagaagagtttgtttggggctacaaccttgcaaaaaaggcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaggggccgttattacagaagagtttgtttggggctacaaccttgcaaaaaaggcaaa 560

                                                                       
Query: 361 taatcgcttctgtgctttacattgttgacttaaaagtatcccctagcctgggaactttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatcgcttctgtgctttacattgttgacttaaaagtatcccctagcctgggaactttct 620

                                                                       
Query: 421 actaaatcatgtagcatgttcaatgatttgggcgactttagggattgctgttttataaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actaaatcatgtagcatgttcaatgatttgggcgactttagggattgctgttttataaag 680

                                                                       
Query: 481 gattaaaccactgatgactttagcttttaacctcagtcataaaatacaagtactcttcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattaaaccactgatgactttagcttttaacctcagtcataaaatacaagtactcttcta 740

                                           
Query: 541 tatccctacaatttaaatgccaatagtcttta 572
           |||||||||||||||||||| |||||||||||
Sbjct: 741 tatccctacaatttaaatgcaaatagtcttta 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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