Query= MSMg01no196_p06.b1 MSMg01no196_p06.b1 CHROMAT_FILE:
MSMg01no196_p06.b1 PHD_FILE: MSMg01no196_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:39 2005
(511 letters)
>mm_chr1_34134110_34135023
Length = 914
Score = 907 bits (469), Expect = 0.0
Identities = 498/509 (97%), Gaps = 3/509 (0%)
Strand = Plus / Minus
Query: 6 gatttatatttagggcactgttgctatgacaacaaagggactgccatcattcctgtgtat 65
|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 714 gatttatatttagggcactgttgctatgacaaaaaaggggctgtcatcattcctgtgtat 655
Query: 66 tagtcggttgttggttgtgtgcactgcacggttactatactgaatcaagtttatagcatt 125
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tagccggttgttggttgtgtgcactgcacggttactatactgaatcaagtttatagcatt 595
Query: 126 tctccagtcaaaatgatcttatttacaatcaattttaaatggaagcacacatttacattc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tctccagtcaaaatgatcttatttacaatcaattttaaatggaagcacacatttacattc 535
Query: 186 acctcatggaatgcaaagtagctgaaaatataaaaaaacaccaagtgcaaacaacagaat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acctcatggaatgcaaagtagctgaaaatataaaaaaacaccaagtgcaaacaacagaat 475
Query: 246 ttaaggggaaaaagaatcacataaagagcagttattaccgctcacgctgttcccggtaaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttaaggggaaaaagaatcacataaagagcagttattaccgctcacgctgttcccggtaaa 415
Query: 306 gttcaatggaagttaactatgctcaccgccaccctcagcaaatcccagt---agacacac 362
||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 414 gttcaatggaagttaactatgctcagtgccaccctcagcaaatcccagtgctacacacac 355
Query: 363 agaggtattctaggcacagccatacacagggaagttctctcaggcaagtcaaaaagtagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agaggtattctaggcacagccatacacagggaagttctctcaggcaagtcaaaaagtagt 295
Query: 423 ccagactctacccacattcctcaaggtaccccacagtctgtcagctctccccaggcagcc 482
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 294 ccagactctacccacattcctcaaggcaccccacagtctgtcagctctccccaggcagcc 235
Query: 483 aaagcaggtagcacaactttcttatccag 511
|||||||||||||||||||||||||||||
Sbjct: 234 aaagcaggtagcacaactttcttatccag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 914
Length adjustment: 10
Effective length of query: 501
Effective length of database: 904
Effective search space: 452904
Effective search space used: 452904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_p06.g1 MSMg01no196_p06.g1 CHROMAT_FILE:
MSMg01no196_p06.g1 PHD_FILE: MSMg01no196_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:40 2005
(602 letters)
>mm_chr1_34104053_34105056
Length = 1004
Score = 1110 bits (574), Expect = 0.0
Identities = 596/604 (98%), Gaps = 2/604 (0%)
Strand = Plus / Plus
Query: 1 atggaagacaaggagttatccaacacttgatgaatgccaatgttttatatcggattggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggaagacaaggagttatccaacacttgatgaatgccaatgttttatatcggattggct 260
Query: 61 ggcagccaggtgcaagcagcattcagcaggagacataattttttccctttataagaggcc 120
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagccaggtacaagcagcattcagaaggagacataattttttccctttataagaggcc 320
Query: 121 acatggacattgggctcccatgggcatcaatgggtgttatgtgcgtagagcaagggaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatggacattgggctcccatgggcatcaatgggtgttatgtgcgtagagcaagggaaag 380
Query: 181 gtcttactatcaaaaagcagggcactgtgctatataaaagataaattggtatgctctcat 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttactaccaaaaagcagggcactgtgctatataaaagataaattggtatgctctcat 440
Query: 241 tagctcatgttttgttctaaaagatatctttgtcatgaggccctcttataaaagagcggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagctcatgttttgttctaaaagatatctttgtcatgaggccctcttataaaagagcggc 500
Query: 301 tgacagtaagcatcagtacttgatagaactctcagtagttgaatcagaccttattaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacagtaagcatcagtacttgatagaactctcagtagttgaatcagaccttattaattt 560
Query: 361 aagaaaaaaaaaaa--cagaacaacctagtggtagagaagtccagacaaaaatatgtatt 418
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaaaaaaaaaaaaacagaacaacctagtggtagagaagtccagacaaaaatatgtatt 620
Query: 419 gaagtctcccatgtgcaatttgtcagtggtacttgccaagaagctcctgatgccgcaagt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagtctcccatgtgcaatttgtcagtggtacttgccaagaagctcctgatgccgcaagt 680
Query: 479 ttagacgactgactgaaatcctttcctcaggagtctgaagggatgggatccgtccataaa 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 ttagacgactgactgaaatcctttcctcaggagtctgaagggatgggacccgtccataaa 740
Query: 539 tctataaagataggaaaggttttgcacattgttcacagaggtctgaaaatgtaattttaa 598
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 tctataaagataggaaagtttttgcacattgttcacaggggtctgaaaatgtaattttaa 800
Query: 599 ttat 602
||||
Sbjct: 801 ttat 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1004
Length adjustment: 10
Effective length of query: 592
Effective length of database: 994
Effective search space: 588448
Effective search space used: 588448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
