Query= MSMg01no197_a16.b1 MSMg01no197_a16.b1 CHROMAT_FILE:
MSMg01no197_a16.b1 PHD_FILE: MSMg01no197_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:47 2005
(635 letters)
>mm_chr1_194440416_194441451
Length = 1036
Score = 1176 bits (608), Expect = 0.0
Identities = 628/636 (98%), Gaps = 4/636 (0%)
Strand = Plus / Plus
Query: 1 ctgcctcatagaaacaagcagtataattcttcttaaggaatgacatcctgggttgacctc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 ctgcctcatagaaacaagcagtataattctt---aaggaatgacatcctgggttgacctc 260
Query: 61 tggcctccacatacatgcatgcatgcatattcacagaaatccatctacgtac-gacacat 119
||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct: 261 tggcctccacatacatgcatgcatgcatattcacagatatccatctatgtaccgacacat 320
Query: 120 aacacacatgcacaaaatcaaatcagataatgggcctaagacgcacattcaggatcttgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacacacatgcacaaaatcaaatcagataatgggcctaagacgcacattcaggatcttgc 380
Query: 180 tgtagatagcattattgtctcagtctcctgacaaaggtccatctatgtgcatgatgctca 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaaatagcattattgtctcagtctcctgacaaaggtccatctatgtgcatgatgctca 440
Query: 240 caacagagatagcattgcaagctttattgccaggtgaggtaagagctctgcagatcccta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacagagatagcattgcaagctttattgccaggtgaggtaagagctctgcagatcccta 500
Query: 300 ttagctggtgaacagtgaactatccaatctcattccagcaggtcagacacaatctattct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagctggtgaacagtgaactatccaatctcattccagcaggtcagacacaatctattct 560
Query: 360 atcagtcctcattggacacagaagtacacaaaaaaactaaagaaccacaatccccttgct 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 atcagtcctcattggacacagaagtacacaaaaaaactaaagaaccacaatcccctcgct 620
Query: 420 atatccagatgaggcccccatcagtgggactaagctggcctcaacacagccctgcccctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatccagatgaggcccccatcagtgggactaagctggcctcaacacagccctgcccctt 680
Query: 480 ccatttcaatccctctgacacctttcccaaggatacccccatcagatcacacaccaggca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatttcaatccctctgacacctttcccaaggatacccccatcagatcacacaccaggca 740
Query: 540 tccaatccctaccacacaggcctgaccagcttttgcctctctctcatggtggttctggag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccaatccctaccacacaggcctgaccagcttttgcctctctctcatggtggttctggag 800
Query: 600 gtgtgaagaaaagggcaggggttggttatctacttg 635
||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgtgaagaaaagggcaggggttggttatctacttg 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space: 641250
Effective search space used: 641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_a16.g1 MSMg01no197_a16.g1 CHROMAT_FILE:
MSMg01no197_a16.g1 PHD_FILE: MSMg01no197_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:47 2005
(604 letters)
>mm_chr1_194548969_194549972
Length = 1004
Score = 1083 bits (560), Expect = 0.0
Identities = 596/614 (97%), Gaps = 10/614 (1%)
Strand = Plus / Minus
Query: 1 tcaggccttgccccagaccccaggctgagaaccactctcttgagtctgccagaggaatgg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 744 tcaggccttgccccagaccccaggctgagaaccactctcttgagtctgtcagaggaatgg 685
Query: 61 gatgaaggcagagttggtacaggattggtggactcagaccatcctcatcttgcctcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatgaaggcagagttggtacaggattggtggactcagaccatcctcatcttgcctcttgg 625
Query: 121 aatttccttgacattgtgaacttggctctttctcagttttccagccaacaactttttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatttccttgacattgtgaacttggctctttctcagttttccagccaacaactttttgaa 565
Query: 181 ctaaaccccattctccccctgggatggatagtaatccttggagtcgaagactaaagccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctaaaccccattctccccctgggatggatagtaatccttggagtcgaagactaaagccat 505
Query: 241 ccagaggaaacaaactctttccccagctgttcatgtgcacggggacttgcccagtgggac 300
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 504 ccagaggaaacaaactctttccccagctgttcatgtgcgtggggacctgcccagtgggac 445
Query: 301 ctgcactttgttgggatgcaaagccattcttgtattccccttctcctctccaactgcggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 ctgcactttgttgggatgcaaagccattcttgtattccccttctcctctccaacttcggt 385
Query: 361 ctttaggctcagacaggaacaataagagcgtgtatcaggtcctatgccctgtcctctgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttaggctcagacaggaacaataagagcgtgtatcaggtcctatgccctgtcctctgaa 325
Query: 421 gcagatgttgaggccatggttcactcaaacctttagcaggactgctggtctgttgagcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcagatgttgaggccatggttcactcaaacctttagcaggactgctggtctgttgagcat 265
Query: 481 cagtctaggaggatgggtgggctcgccctgcagggtcagtcttctcaggtcttacttctt 540
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 264 cagtctaggaggatgggtgggctcaccctgcagggtcaatcttctcaggtcttacttctt 205
Query: 541 tcttccgggaggtggtggcacatgcctttgatcccagcacttggg----------aggct 590
||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 204 tcttccgggaggtggtggcgcatgcctttgatcccagcacttgggaggcagaggcaggct 145
Query: 591 gatttctgagttcg 604
||||||||||||||
Sbjct: 144 gatttctgagttcg 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
