BAC Information

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BAC

Clone NameMSMg01-197A20
Chromosome1 (Build37)
Map Location 143,560,110 - 143,560,743
singlet/doubletsinglet
Overlap genenone
Upstream geneEG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197A20.T7 (MSMg01no197_a20.b1)MSMg01-197A20.TJ (MSMg01no197_a20.g1)
ACCAG384933AG384934
length1,518713
length of high quality
(start - end)		---636 (73 - 708)
definitionCHROMAT_FILE: MSMg01no197_a20.b1 PHD_FILE: MSMg01no197_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:48 2005CHROMAT_FILE: MSMg01no197_a20.g1 PHD_FILE: MSMg01no197_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGTGAGGGAGGTGATAATAACAACAACACTATTATAAGTGGGTGTGAGT
GAGGTAGGGCCTGTGCTGCGTNCTTTCTTTTTAGTCGTGGCGGCTATGTA
CCAGCAAATTTATACGTTGGGGTCGGGGCGGCGCGGCACACAGGGGATCA
GGGGGCAGCGCGACTAACTGATAATAAACACAATAGATTATTCCAATCGC
GCCGGCGCGATGCACGCTATATGTTCAGCCCGACCCTCCCCACGCCGTAT
GCTCCTCTGTTTTCTCGTTTTGCGGGCTGATTAGGCGCGCGCCGTGGTTC
GTATGCAAGTTGCGCGGGTATGGGAGATGTTTGTCGACTACACAACCGAA
GAGGACAGCCGTGGTCTGCACCGATTTATCCCGTTTTTTTGTGTCGATCG
TTGGCGGGCGGTGAGATTGATGTACCAGGCGATCAGCGCCCAACAGCTGG
AAAAGAGACTCTTTGTAATGAATTAGACCTTATGTGAAGTATACACAAAT
CTATTGCTCGACGGTAGCAGCGTCGGCGGGAGATTGGATAGCGAGAGGCG
CGGTTGGCGTTTCGTTGTATTATCCATCCTGTTTGTGCGGTTGTTTTGGC
GTAGGGCGATTAGAGGGAGACCGGGCTTGAGGATATTATTCTCTACTCTC
AGCCCTTCTTTTAGGACCTCCGAATATATATTTATTATTGAGGGATCACG
ACAATTTGTAGATTTGGAGTGGAAGCANTAGGGTCGAGACGTGATATGAG
TAGGGGGCGGAGGTGAGGTAAGAGAGTAGCGTATTTGACGTTGAGGCGGG
ATATGATAAGCGTATAATAAGAAGACATGTCGATAGCGTATGGTATGATC
GCGTGGGGGTACATACGCGTGCGATGTGTGTGTATGGACGGCGACGTGGG
CATGGCGGAGCCGTTACCGCCGTCCAGCTCGATTGAGGTGACGGTGTCAT
ATAACGTGGTGTCACCGGCTGCGCCGCTCGAGTGGCAGCTCACCCTAGTG
CATCACCGAGCCTGAGGTTCAGAGTACATCAATGAGTATATGTTGTGTAG
GACGACGAATCGTGGTGTGGTGTGTGATACTGGTGATGTGGAGGGACGCG
CGGNCAAGTGAGGAGAGGACGACCGAATGAANTGGAGATGAGGGTGTGCG
AGACACAGCAGCCACGATAACAACCCACCCCGACCCCGATTGTGTATCAA
CACCACCGTCTCGGGTATATATATTATCGCGCGCGCACGCCCCGANTGTC
GCGCCGGTATTGCGTGTCATGCGAGTGCGCGGCGTGCAGTACANCTGAGT
GATTAGCGGTGTGTATGTTTGTTATTGTTATGTCACCACACATATATCGT
CAACCACTTATCTCGTATCTCCCACAATTTTTGGGGTGTTGGCACCACGT
TATATACTGCGAGCCTAGCGTGTAGTGTGGGATATGTGTTGTGGTATAGA
CCGCGTCTCTGTCACGCACACGGTCGCCTCGCAGTGTTTATTTATTAACC
GTCCGGCCGCGCGTCGTC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACATGTTGGGTAGACTGTAGAGAAAGAG
GAATACTCTTTCATTGCTGGACAGAGTTGCAAACTGGTACAACCACTGTG
GTAACCAATCTCACGATTTCTCAGAAAATTGTCAATAGCTCTACCTGAAC
ACCCAGCTAATATGCCCAAAGGTTGTTCCACCATAGCGCAAGGACACATG
CTCCACTATGTTCTGAGCAGCCTTATTTATTATAGAAATATCCAGACACT
AAAAATAGCCAAGATGTACCTCAAATATAGAATGGATACAGAAAATGTTG
TAAATTTACACACTGGACTACTAAGATACACAGACCTACATACACTATAC
ATCATAAAAATACTCACAAGTAATGAAGTGTTATAAAAGCAGCACGTTTT
TTTATTAACATGCACAAAATAATTGGTGATATTGGAAAAAGTGATCAATT
TGATGAAGAGAAAAATATAAATACTCCTCAATAACTCAACTTTTATGGTT
GTAAGGTTTTTAGTTTTTAAATTAAAAACCTCATCATTATAAATTTTTAC
TACAAAATAAATAAAAATTAAATGTGTAAAAGATAATAAATTAAGACATA
AGCAAAAGCAGAAAAATGCATTAAAATTAAATGCAACTTAGAAAGAGAAA
TAAATATAACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_a20.g1 MSMg01no197_a20.g1 CHROMAT_FILE:
MSMg01no197_a20.g1 PHD_FILE: MSMg01no197_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:48 2005
         (636 letters)



>mm_chr1_143559910_143560943
          Length = 1034

 Score = 1123 bits (581), Expect = 0.0
 Identities = 622/637 (97%), Gaps = 4/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgttgggtagactgtagagaaagaggaatactctttcattgctggacagagttgcaa 60
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 acatgttgggtagactgtggagaaagaggaatactctttcattgctggagagagttgcaa 260

                                                                       
Query: 61  actggtacaaccactgtggtaaccaatctcacgatttctcagaaaattgtcaatagctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggtacaaccactgtggtaaccaatctcacgatttctcagaaaattgtcaatagctct 320

                                                                       
Query: 121 acctgaacacccagctaatatgcccaaaggttgttccaccatagcgcaaggacacatgct 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgaacacccagctaatatacccaaaggttgttccaccatagcgcaaggacacatgct 380

                                                                       
Query: 181 ccactatgttctgagcagccttatttattatagaaatatccagacactaaaaatagccaa 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ccactatgttctgagcagccttatttattatagaaatgtccagacactaaaaatagccaa 440

                                                                       
Query: 241 gatgtacctcaaatatagaatggatacagaaaatgttgtaaatttacacactggactact 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gatgtacctcaaatatagaatggatacagaaaatgttgtacatttacacactggactact 500

                                                                       
Query: 301 aagatacacagacctacatacactatacatcataaaaatactcacaagtaatgaagtgtt 360
           ||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 501 aagatacgcagacctacatacagtatacatcataaaaatactcagaagtaatgaagtgtt 560

                                                                       
Query: 361 ataaaagcagcacgtttttttattaacatgcacaaaataattggtgatattggaaaaagt 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaagcagcacatttttttattaacatgcacaaaataattggtgatattggaaaaagt 620

                                                                       
Query: 421 gatcaatttgatgaagagaaaaatataaatactcctcaataactcaacttttatggttgt 480
           |||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||
Sbjct: 621 gatcaatttgatgaagagaaaaatataaatactcat---taactcaacttttatggttgt 677

                                                                       
Query: 481 aaggtttttagtttttaaattaaaaa-cctcatcattataaatttttactacaaaataaa 539
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 678 aagttttttagtttttaaattaaaaaacctcatcattataaatttttactacaaaataaa 737

                                                                       
Query: 540 taaaaattaaatgtgtaaaagataataaattaagacataagcaaaagcagaaaaatgcat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 taaaaattaaatgtgtaaaagataataaattaagacataagcaaaagcagaaaaatgcat 797

                                                
Query: 600 taaaattaaatgcaacttagaaagagaaataaatata 636
           |||||||||||||||||||||||||||||||||||||
Sbjct: 798 taaaattaaatgcaacttagaaagagaaataaatata 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1034
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1024
Effective search space:   641024
Effective search space used:   641024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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