CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAACCCTTGATCTTGGTCAAGGATGCCCTTGGACTGTTGGAACA
CTGGCAGAAGGCTTTAGCCATGTCAGAGCACTTATAGGAAAATACTGAAA
GAGAGCACGTGGATCCATACTCTAGACTAGCGTAGTACTGGAACTCGGGA
ATGAAAAATTAATGTATGGGTAGAGAACACTAGCCTCCAGGAGGAGAGCT
TCCTTGAAACTCTTTTGCCTCATGAGTGACTTTTAAGCCTTTCGGCTTGT
CCAGTTGACTCGACCAGAGAGCGTAGCAGGTAATCTGTATGCTTCTTGTA
CTTTATTATGCAACTCCTTCTTTACATTAGGAACATATTCTTTTATAGTT
TTGTTAAAAGCATTTTCTGTGACTTTATACTGGATTTCTTCCTTTTCCTT
TATACCTATTACTCATACCTTTAGTCGCTTCATATTTTTCAAGATTTCCT
AAATGTTTTGTATCTGATTTCTAGATTTAACATTTTCCTCACCTGAGCTA
TCCATTTCTTCTACTTTGCCTACAAGATGAAATCCTCTCTTCCATATCTT
GCAATCTGTTGATAAGCCTTACCCCTAAGGTTTCTGTTTGACAAATATAC
TAAGTTTTTCATTTCCAGTTCTTATTTCAGTTTGACTTTTATTAAGTGAT
TTTATTGCTTTGTT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCATCTTTTCCAATAACTGA
TTGAACATGAAAAGGGAAAAGCGATACAGACTTGACATTTTTTCCCCTAA
AACATGCTTGGATGCTGCTGGCGCTTTGGAAGATTGTGGAAGATTTAGAA
GTTGGATTCTCCCTGGAGAATGTCAGTCACTGATAGCCAGGCTCATGGTC
TTACACAGTGGCCTGCTTCCTGTCCACTGCTTTCTAACTATGGATGCATT
GTGACTACTCACCCAAATTCCCATGCCACATCTTCCCTCCTGTGATGGAC
TGTGCTCTCTTAAAACATTGTTCCAAAACAATGCTTTCCTTTCTTAGATT
GCTTTTGCTATTACCAAAAAGTGAGAAAAGTAACCACCATAGTGTGCTTT
TTAAAATCAACTGCATGTTGGAACCAAAAAGGTTTCTATCAAATAGTCAA
AGAGTGACATCATGCAGAGTATGGATGATGCTACCACCTTTATTTGACAA
AAAATTGGTGTCCTAATTAGTGCAATAAGATTAACAAGAAGTTAAAATCC
TATAAATTCGAATGAAAGCAATTTCCTTATCATTCCACATAGTTTTATAA
GCATAGAANATTCNAAAGAATTCACAAACTATTATAATTAATAAGTGAAT
TGAGCAGAAGGCTAAATACAAAATCATTT

Query= MSMg01no197_d21.g1 MSMg01no197_d21.g1 CHROMAT_FILE:
MSMg01no197_d21.g1 PHD_FILE: MSMg01no197_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:03 2005
         (584 letters)



>mm_chr1_23054485_23055468
          Length = 984

 Score = 1064 bits (550), Expect = 0.0
 Identities = 574/582 (98%), Gaps = 1/582 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgcatcttttccaataactgattgaacatgaaaagggaaaagcgatacagacttgaca 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct: 200 aatgcatcttttccaataactgattgaacataaaaagggaaaagcgatagacacttgaca 259

                                                                       
Query: 61  ttttttcccctaaaacatgcttggatgctgctggcgctttggaagattgtggaagattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 260 ttttttcccctaaaacatgcttggatgctgctggcgctttggaagattgtggaagtttta 319

                                                                       
Query: 121 gaagttggattctccctggagaatgtcagtcactgatagccaggctcatggtcttacaca 180
           || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 gatgttggattctccctggagaatgtcagtcactgatagccaggctcgtggtcttacaca 379

                                                                       
Query: 181 gtggcctgcttcctgtccactgctttctaactatggatgcattgtgactactcacccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 gtggcctgcttcctgtccactgctttctaactatggatgcattgtgactcctcacccaaa 439

                                                                       
Query: 241 tt-cccatgccacatcttccctcctgtgatggactgtgctctcttaaaacattgttccaa 299
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttccccatgccacatcttccctcctgtgatggactgtgctctcttaaaacattgttccaa 499

                                                                       
Query: 300 aacaatgctttcctttcttagattgcttttgctattaccaaaaagtgagaaaagtaacca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aacaatgctttcctttcttagattgcttttgctattaccaaaaagtgagaaaagtaacca 559

                                                                       
Query: 360 ccatagtgtgctttttaaaatcaactgcatgttggaaccaaaaaggtttctatcaaatag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccatagtgtgctttttaaaatcaactgcatgttggaaccaaaaaggtttctatcaaatag 619

                                                                       
Query: 420 tcaaagagtgacatcatgcagagtatggatgatgctaccacctttatttgacaaaaaatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcaaagagtgacatcatgcagagtatggatgatgctaccacctttatttgacaaaaaatt 679

                                                                       
Query: 480 ggtgtcctaattagtgcaataagattaacaagaagttaaaatcctataaattcgaatgaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggtgtcctaattagtgcaataagattaacaagaagttaaaatcctataaattcgaatgaa 739

                                                     
Query: 540 agcaatttccttatcattccacatagttttataagcatagaa 581
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agcaatttccttatcattccacatagttttataagcatagaa 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)