Query= MSMg01no197_e14.b1 MSMg01no197_e14.b1 CHROMAT_FILE:
MSMg01no197_e14.b1 PHD_FILE: MSMg01no197_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:07 2005
(315 letters)
>mm_chr1_45086686_45087400
Length = 715
Score = 578 bits (299), Expect = e-169
Identities = 308/311 (99%)
Strand = Plus / Minus
Query: 5 gaattcacataactagaaagaatcacagaataaatactaaggcataaatgcatgttcaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcacataactagaaagaatcacagaataaatactaaggcataaatgcatgttcaga 456
Query: 65 attgggggatggataggctcattgatactacagttccccatctgtatcctgctgtattca 124
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 455 attgggggatagataggctcattgatactacaattccccatctgtatcctgctgtattca 396
Query: 125 tctgtcctagatgacagcacatttacttcatggcatataaattgctgttcttgggaaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tctgtcctagatgacagcacatttacttcatggcatataaattgctgttcttgggaaaac 336
Query: 185 ttctcttgggctcacataacttctgtaagatatttctatcactcatttacaaatatcatc 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttctcttgggctcacataactgctgtaagatatttctatcactcatttacaaatatcatc 276
Query: 245 caatctttgtccatattctcttttatattgtcaaagaacacactgggctcagttattcac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 caatctttgtccatattctcttttatattgtcaaagaacacactgggctcagttattcac 216
Query: 305 tagttgttgaa 315
|||||||||||
Sbjct: 215 tagttgttgaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_e14.g1 MSMg01no197_e14.g1 CHROMAT_FILE:
MSMg01no197_e14.g1 PHD_FILE: MSMg01no197_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:07 2005
(583 letters)
>mm_chr1_45006211_45007194
Length = 984
Score = 1048 bits (542), Expect = 0.0
Identities = 569/582 (97%), Gaps = 9/582 (1%)
Strand = Plus / Plus
Query: 1 tttgtaaattttagatattagccctctgtcatggttgttgaaattcctttcccaatcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtaaattttagatattagccctctgtcatggttgttgaaattcctttcccaatcttc 260
Query: 61 aggctgctgatttgtcctactgaagcattgcagtatcatgaagcctacccactcagagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctgctgatttgtcctactgaagcattgcagtatcatgaagcctacccactcagagaa 320
Query: 121 cgggagagggaatggggaaaaattgtgagatggggtgaccaggagtggggcaatgagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgggagagggaatggggaaaaattgtgagatggggtgaccaggagtggggcaatgagtgg 380
Query: 181 aatgtaatgtgaataaattaaaaaattgaattaaattaaaaatagttattagctaacctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aatgtaatgtgaataaattaaaaaattgaattaaattaaaaatagttattagctaacttt 440
Query: 241 ttaagctgttatactgaatgttaacattcatttaaatgcaacaaaccactagcttaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagctgttatactgaatgttaacattcatttaaatgcaacaaaccactagcttaatgg 500
Query: 301 aatgtgattttgataagtgctgatattcttcagtgtgaacccc----acttgtgcaaaca 356
||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 501 aatgtgattttgataagtgctgatattcttcagtgtgaa----gggtacttgtgtaaaca 556
Query: 357 aatctaaatatgccacaaaaaaa-tcacagttacaaaagcaacaagagcatgttactgtg 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatctaaatatgccacaaaaaaaatcacagttacaaaagcaacaagagcatgttactgtg 616
Query: 416 gtattcaaagaaattaataatctgtatcttattttggtctcaatctgaaaaagaaaaagt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtattcaaagaaattaataatctgtatcttattttggtctcaatctgaaaaagaaaaagt 676
Query: 476 agaatgcaatgatggtggtaaagaaaattatcttgtaagtgtgttcaatttccacagtat 535
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 677 agaatgcaatgatggtggtaaagaaaattatcttgtaagtgtgttcgatctccacagtat 736
Query: 536 gaatcaggtctgcaaaaagcaacagctaagacctgcacttgt 577
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaatcaggtctgcaaaaagcaacagctaagacctgcacttgt 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
