CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGAGGGTTAGGTGACCTCTATCTTAATCTTGGCTATCTCTAA
TGATACTCCATTGCTGGGACCTGGAGGGGCTGGAAGCTGTTGCTGGAGAA
GTCTGGAAACTTGCTGAGGAAGTCTGGAAATTGCTGCTGACCCATTGTCC
TTGCTTCAGGCCAGGTGGCAGGGCAGCTTCTGAGGCCTGGACTTGCCTGG
ATTTGCCCAGTTCTTGGAAACAGAGATTTAGGCCTCGTCCTCTGAACTGC
CAATCTGAAGGTTATCATGGAGTCAGCCTAGCCTTCCCATTACTTTAATG
ACAATTTATTTCATTTCGATCCTTGTGCTAGGATAACAACATATTAAGGG
ATAATCCTTCTCGCCACAAAATTAAAATACCTGGCCTGTATAGATGACTA
ATATTCCAGTTGGACAAGATCAATCACCTGGCCAAAAGACCGCCTCTAGA
AAGGTAGGCTCACATAAAGCCGTGCTAAAGAGATAGTTAGAAAAATTATC
ACTTAAATGAGATACTTTGCTTTTTTTGCCTTCCCGAAATTTCTACGCCC
CCCCCCCGCCGCCCCATGCTCCATTATAGTCTTTTACAGAGTATAGCTAT
TGTTGATTTGTAAGTCACCAACTTTTTTGAAGCACACAGAAAAGAATGAC
TTCATTTTCTTTCTTTTCCTTTTCTTTCTTTG

AAACAAAACACANAAAAAAACAAAAANACACCAAAAAACAAAAGTAAACT
NAAAACAAACAAAAAAATTGAACAAATATAAAAAAAAAAAAAATAAAAAA
AAGAGGGGGGNNNNNNNNCTTCTATGATAXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATA
TAGCACTTTGATTGGTTTGGTTTTTGGTTCCATTAATTCAAGGAGGCTCA
ACAGCTTGAAAAGAAATTGATTCCAGAGCAATCTGCATGGCAGAACTTGG
GGACACCAAACTACATTTCTATAAATATGAATGCCATTTTCAGAGTTTGA
TTTATGTGCTAGCACATAAAGAGGCTGGGCTGAAGGCCTTAAGTCTGGTC
CACAACTGGATATGCTGTTTTAACTTTTACTGAAGTTGAATCTATATGGA
TCCTGTCTGTTGACATGCCTTATATACTGTTAATAATTGCTGTTCTAGTG
CTACATCCAAGCTTTTATATCTTTCCATGACTACCACCCACATTCTATAG
GAGATGTTTACTCAGTTCCTCTAGTTCAGTTCTTGCAGTAGCCCTATGAG
CTTCTAATAACTTCCAGCATAAATTTGGCATCAAAAGTATTGAGGCACAC
AGATTAGCCTGTCCTATGAGTATCCTAGCTTGCTCAAAAGCCTCTTGAGA
TTTACTTGTATCCTGTGTGGAACTTCTTTTTATCAAGTCGTATAAAGGAT
GAACATTTTAAGCAAGATGGTTATGATAATGCCGCAGTTCCCTAAGTAGC
TCCACAAATACCTGCAGCAGTTTCTCATTCACAGACACAAGCTGATACAG
AATTTTATCAATAT

Query= MSMg01no197_h22.b1 MSMg01no197_h22.b1 CHROMAT_FILE:
MSMg01no197_h22.b1 PHD_FILE: MSMg01no197_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:24 2005
         (687 letters)



>mm_chr1_196960125_196961212
          Length = 1088

 Score = 1224 bits (633), Expect = 0.0
 Identities = 672/685 (98%), Gaps = 1/685 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagggagggttaggtgacctctatcttaatcttggctatctctaatgatactc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagggagggttaggtgacctctatcttaatcttggctatctctaatgatactc 263

                                                                       
Query: 64  cattgctgggacctggaggggctggaagctgttgctggagaagtctggaaacttgctgag 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattgctgggacctggaggggctagaagctgttgctggagaagtctggaaacttgctgag 323

                                                                       
Query: 124 gaagtctggaaattgctgctgacccattgtccttgcttcaggccaggtggcagggcagct 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaagtctggaaactgctgctgacccattgtccttgcttcaggccaggtggcagggcagct 383

                                                                       
Query: 184 tctgaggcctggacttgcctggatttgcccagttcttggaaacagagatttaggcctcgt 243
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgaggcctagacttgcctggatttgcccagttcttggaaacagagatttaggcctcgt 443

                                                                       
Query: 244 cctctgaactgccaatctgaaggttatcatggagtcagcctagccttcccattactttaa 303
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccctgaactgccaatctgaagcttatcatggagtcagcctagccttcccattactttaa 503

                                                                       
Query: 304 tgacaatttatttcatttcgatccttgtgctaggataacaacatattaagggataatcct 363
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 tgacaatttatttcatttcgatccttgtgctaggataacaacgtattaagggataatcct 563

                                                                       
Query: 364 tctcgccacaaaattaaaatacctggcctgtatagatgactaatattccagttggacaag 423
           ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctggtcaaaaaattaaaatacctggcctgtatagatgactaatattccagttggacaag 623

                                                                       
Query: 424 atcaatcacctggccaaaagaccgcctctagaaaggtaggctcacataaagccgtgctaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atcaatcacctggccaaaagaccgcctctagaaaggtaggctcacataaagccgtgctaa 683

                                                                       
Query: 484 agagatagttagaaaaattatcacttaaatgagatactttgctttttttgccttcccgaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agagatagttagaaaaattatcacttaaatgagatactttgctttttttgccttcccgaa 743

                                                                       
Query: 544 atttctacgcccccccccc-gccgccccatgctccattatagtcttttacagagtatagc 602
           |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 744 atttctacacccccccccccgccgccccatgctccattataatcttttacagagtatagc 803

                                                                       
Query: 603 tattgttgatttgtaagtcaccaacttttttgaagcacacagaaaagaatgacttcattt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tattgttgatttgtaagtcaccaacttttttgaagcacacagaaaagaatgacttcattt 863

                                    
Query: 663 tctttcttttccttttctttctttg 687
           |||||||||| ||||||||||||||
Sbjct: 864 tctttctttttcttttctttctttg 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space:   729806
Effective search space used:   729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)