Query= MSMg01no197_l14.b1 MSMg01no197_l14.b1 CHROMAT_FILE:
MSMg01no197_l14.b1 PHD_FILE: MSMg01no197_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:43 2005
(571 letters)
>mm_chr1_65244189_65245158
Length = 970
Score = 1073 bits (555), Expect = 0.0
Identities = 564/567 (99%), Gaps = 1/567 (0%)
Strand = Plus / Plus
Query: 5 gaattcacttttcttgctcgagttaaccttttgtgtgctcgtttgatcacacagggtgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttttcttgctcgagttaaccttttgtgtgctcgtttgatcacacagggtgtg 264
Query: 65 tcctactgattgttgtcggccttcataggcagctctctttctctactctgttcttattca 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 tcctactgattgttgtcggccttcataggcagctctcttcctctactctgttcttattca 324
Query: 125 cctccctgcagtttgagactcttggcatcttagcaggcaccaaggtaacaggaagttaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctccctgcagtttgagactcttggcatcttagcaggcaccaaggtaacaggaagttaag 384
Query: 185 ctcacccttttttgtactttgtgttctacatttaggagcaatgagccaatctcatacttg 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcacctttttttgtactttgtgttctacatttaggagcaatgagccaatctcatacttg 444
Query: 245 ttagtttgacaggtttgtcaagtattaacctaagcactgtcagtattcaattaagaatat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttagtttgacaggtttgtcaagtattaacctaagcactgtcagtattcaattaagaatat 504
Query: 305 ccagaattattgcctttttttttctgttgccttaccacttctctcagtcttcttgttact 364
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagaattattgcctttttttt-ctgttgccttaccacttctctcagtcttcttgttact 563
Query: 365 attagaaatactaatggttttatttttttaaattttcttttaagagttattttgtgtttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attagaaatactaatggttttatttttttaaattttcttttaagagttattttgtgtttt 623
Query: 425 attatttgtgtatgtgtgtgttgcaagttatgtatgtgtaccagttgtgtacctagtgtg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attatttgtgtatgtgtgtgttgcaagttatgtatgtgtaccagttgtgtacctagtgtg 683
Query: 485 ttcacagaagtcagaagagggcattggatcccctgagattggagtcacagatggtgctgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttcacagaagtcagaagagggcattggatcccctgagattggagtcacagatggtgctgg 743
Query: 545 gaattgaatctagatcctctttaagag 571
|||||||||||||||||||||||||||
Sbjct: 744 gaattgaatctagatcctctttaagag 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_l14.g1 MSMg01no197_l14.g1 CHROMAT_FILE:
MSMg01no197_l14.g1 PHD_FILE: MSMg01no197_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:43 2005
(169 letters)
>mm_chr1_65333502_65334070
Length = 569
Score = 311 bits (161), Expect = 1e-89
Identities = 167/169 (98%)
Strand = Plus / Minus
Query: 1 gtattcaattcactgacttatccctttgacaatattctttctaatgagcagaaataaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtattcaattcactgacttatccctttgacaatattctttctaatgagcagaaataaatt 310
Query: 61 gtgttttaataactgcatttattatctacaaaagaacaaaggatgaattatccacttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtgttttaataactgcatttattatctacaaaagaacaaaggatgaattatccacttagt 250
Query: 121 ctataagtctttactatgctgtaaagctttgccctgcctcacccagact 169
||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 249 ctagaagtctttactaagctgtaaagctttgccctgcctcacccagact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space: 90321
Effective search space used: 90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
