BAC Information

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BAC

Clone NameMSMg01-197N22
Chromosome1 (Build37)
Map Location 90,179,373 - 90,179,654
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197N22.T7 (MSMg01no197_n22.b1)MSMg01-197N22.TJ (MSMg01no197_n22.g1)
ACCAG385427AG385428
length742740
length of high quality
(start - end)		668 (46 - 713)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no197_n22.b1 PHD_FILE: MSMg01no197_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:54 2005CHROMAT_FILE: MSMg01no197_n22.g1 PHD_FILE: MSMg01no197_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATACTGAGGAAATTCAAATGGCTGAGAAACTCCTAAAGAAATGT
TCAACATTCTTAGGGAAATGCACATCAAATCAACCCTGGTATTCCACCTC
ACACCAGTCAGAATGGCTAAGATAAAAAACTAAGCTGACAGCAGATGCTG
GTGAGGATATGGAGAAAGGTGTGGGATTGCAATCTGGTACAACCACTCTG
GAAATCAGTTTTGTGGTTCCTCAGAAAATTGGAGATTCTACTACCTGAGG
ATCCAGCTATACCACTCCTGGGCATGTATCCAGAAGATGCTCCAACAAGT
AATGAGGACACATGCTCCTCTGTGTTCATAGCAGCTATATTTATTATATC
TAGAAGCTGCAAGTAACACAGATGTCCTTCAACAGAGGACTGGATACAGA
TAAAGGGGTACCACTTAGCTATTAAAAACACTGACTACTTGAAATTTGTG
GACAAATGGATGGATCTAGAAAATATCATCCTGAGTGAGGTAACTCAGGC
ACAAAAGAACACACATGATATGTACTCACTGTTAAGTGGATACTAGGCAA
ATGGCATGAACTTTCCATGATTCAACTCATATACCACATGAAGCTGAATT
GGAAAGAACACCAAAGGGAGTATGCTTTAGTACCTCTTAGACTTTGACAA
ATGCTTTAATTCAAGAATAATCTCACAAGTGCCAAGAGTTTT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGCTCCCTTCCTTTCTTTGTGT
AGGTTAGATCATCTAGTACTTTCTGCTTCCTGCTTTATGCTTCTGCAGCA
TCCACTCCTAGATCTGTTTACAGGCTTACATTTACAAGGTTTGACTTTCA
CGTTTGGCACTGACTTTATTCACGATTGCTTTAATGCTTCATTGTTATCC
GACTTATGGAACTACCTGCTTGGTTACTCTCTGTGCGCTGAATCGCAATG
TGAGAGTTTTAGACTAGGTTTGCTCTCCCAACCTACTGCATTGTGCAGCA
AGTTTAAGCAGTATTCTGGTCATTATGCCTGGGCTCAAGGTCCCCAACCT
CTTTCATATGGACTCCCGAAGAACATTCCAGATGCAAACCATGGCGTCCA
TTCTGAGCAACCCTCAGAGTTATCAGTGAGTCTCATGATGCTCTTATTAC
ATGTTTTGTCTTGGATAATATGATGGGATTGACTGGTGGCTCCAAAGGCA
ATCTACTTCCATTTAGTAATAACAGTAACGTGCCCACTGAGCAAAATATG
CTAAGGGCTTTGGATCTATTGAACTTTTCATTGTCCCACTAAAGGAGGAA
GGGACTTGTGTTGAGATTCCAATTCCCGAATCTGAAACCCAGGCTACTCT
GGACAATGTGTCTGATTCTCAATGATGCCATTCATAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_n22.g1 MSMg01no197_n22.g1 CHROMAT_FILE:
MSMg01no197_n22.g1 PHD_FILE: MSMg01no197_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:54 2005
         (284 letters)



>mm_chr1_90179173_90179856
          Length = 684

 Score =  491 bits (254), Expect = e-143
 Identities = 275/282 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctcccttcctttctttgtgtaggttagatcatctagtactttctgcttcctgcttt 60
           |||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgctccctccctttcattgtataggttagatcatctagtactttctgcttcctgcttt 260

                                                                       
Query: 61  atgcttctgcagcatccactcctagatctgtttacaggcttacatttacaaggtttgact 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 atgcttctgcagcatccactcctagatctgtttacaggcttacgtttacaaggtttgact 320

                                                                       
Query: 121 ttcacgtttggcactgactttattcacgattgctttaatgcttcattgttatccgactta 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacgtttggcgctgactttattcacgattgctttaatgcttcattgttatccgactta 380

                                                                       
Query: 181 tggaactacctgcttggttactctctgtgcgctgaatcgcaatgtgagagttttagacta 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tggaactacctgcttggttactctctgtgtgctgaatcgcaatgtgagagttttagacta 440

                                                     
Query: 241 ggtttgctctcccaacctactgcattgtgcagcaagtttaag 282
           |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ggtttgctctcccaacctacagcattgtgcagcaagtttaag 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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