BAC Information

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BAC

Clone NameMSMg01-198D20
Chromosome1 (Build37)
Map Location 107,581,391 - 107,581,706
singlet/doubletsinglet
Overlap gene2310035C23Rik
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249
Downstream geneLOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198D20.T7 (MSMg01no198_d20.b1)MSMg01-198D20.TJ (MSMg01no198_d20.g1)
ACCAG385654AG385655
length742724
length of high quality
(start - end)
324 (46 - 369)243 (387 - 629)
definitionCHROMAT_FILE: MSMg01no198_d20.b1 PHD_FILE: MSMg01no198_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:24 2005CHROMAT_FILE: MSMg01no198_d20.g1 PHD_FILE: MSMg01no198_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGCTGCATGTTTCTTAGTATACAACACAGGTTCTAAATGAC
AGAGTTTTATGCTTGAAGCTATAGTACATCTCTATAAAAGGTAGAATATA
ACCAAGCAAATACAGATTTGGGAGAATTAATATATTTTTCTTAAAAGTTT
AAACTTTGATTTTCTGGCAATTTTACACATGTATACTTTGTATTTTCTTT
CTCCCTCCCACTGTCAAGAAAGATTCTTAATGCCACACAATATCAATACA
TACATGAATTTGTCTCCTAAAACACTGGATTGAAGTGCAAACTGAGTACC
CTGTAAGGAGATAAATTTTGTGGACCACCGCCTCCACGCAGTTCTTAAAA
ATCACCATTCTTTCTAAAAGTATATGAAGGTGTATATGTGTGCTTATGTG
TATAAAATGCTGTAGGAGCTAACAACCAATCTACTCATTCTACTTGACCA
ACACAAACTAAGGTGATGTAATAACTACAAACATGCATGTATATTAACAG
CATGCATTACAGTTTTACTGTTTACAATTGTAACATTAAAGTCAGTATAA
GCAATGTTAAATTACCCTAGGTCCCAACCCAGTGCAACTATTTTACAATG
CTTGTTTTCAACTTGATTCAGGCTGATATGAGACCCTTCCTCCAAGCCTT
TCAGGGAAGAAAGAAACCCTTGCCCTTATTGGTCTTTCTGTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTGAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAAATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGAAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACCACCGGAGGATC
CAGCAATACCTCTCCTGTTTTTATACCCCCCCCACGCCCCAACTGGTAAG
AAAGACACATGCTCCACTATGTCCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAC
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATACTAGCCCCAAACCTAGGATACCCAAGATGTAAGATACATTTGC
TAAACACATGAAACTCAAGAAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_d20.b1 MSMg01no198_d20.b1 CHROMAT_FILE:
MSMg01no198_d20.b1 PHD_FILE: MSMg01no198_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:24 2005
         (324 letters)



>mm_chr1_107581187_107581910
          Length = 724

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctgctgcatgtttcttagtatacaacacaggttctaaatgacagagtttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcactctgctgcatgtttcttagtatacaacacaggttctaaatgacagagtttta 461

                                                                       
Query: 65  tgcttgaagctatagtacatctctataaaaggtagaatataaccaagcaaatacagattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgcttgaagctatagtacatctctataaaaggtagaatataaccaagcaaatacagattt 401

                                                                       
Query: 125 gggagaattaatatatttttcttaaaagtttaaactttgattttctggcaattttacaca 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 400 gggagaattaatatatttttcttaaaagtataaactttgattttctggcaattttacaca 341

                                                                       
Query: 185 tgtatactttgtattttctttctccctcccactgtcaagaaagattcttaatgccacaca 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 340 tgtatactttgtattttctttctccctcccactgtcaaaaaagattcttaatgccacaca 281

                                                                       
Query: 245 atatcaatacatacatgaatttgtctcctaaaacactggattgaagtgcaaactgagtac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atatcaatacatacatgaatttgtctcctaaaacactggattgaagtgcaaactgagtac 221

                           
Query: 305 cctgtaaggagataaa 320
           ||||||||||||||||
Sbjct: 220 cctgtaaggagataaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)