BAC Information

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BAC

Clone NameMSMg01-198E15
Chromosome1 (Build37)
Map Location 80,490,875 - 80,578,733
singlet/doubletdoublet
Overlap geneDock10
Upstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198E15.T7 (MSMg01no198_e15.b1)MSMg01-198E15.TJ (MSMg01no198_e15.g1)
ACCAG385684AG385685
length872742
length of high quality
(start - end)
255 (96 - 350)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no198_e15.b1 PHD_FILE: MSMg01no198_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:28 2005CHROMAT_FILE: MSMg01no198_e15.g1 PHD_FILE: MSMg01no198_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,578,483 - 80,578,733)(80,490,875 - 80,491,163)
sequence
TTTTTTTTTTTTCACNTNNCNNCTCTCAATNCTCATGAATAGTAATTATT
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGGTGTGCCTACTGCAATCAAACTTTCCCCATACATATCATCT
GCAGGATCATAGGGGCCCAAAGCCACACCAGGATCACCTCGCAGATTCTT
GTACTCTGTCTCATTTAAACTTATAAATGATTAACAGACTGTTTAATTTT
CTTTAAAGTCAATCAGGACTACCACTAAAATAAATGTTCGTTCTCATATC
TGTACATCTAAAGATACTCAGTGCAGAGATATCTAAGATTCTCATGCTGT
CAATGGCCCAGCAAGTGGTGGTCCACCTCTGCTTGCATCCTTCCAGTGAC
AAGACTCCTATTATTTTTTTCACCCACCCCCCCGCCTCTGCCTTTCTATA
GTTTTATTATTTGATACCTTATTTTTATAAGAATAATTATTGCTGCCTTA
TGAATTTCTATGTAAATGCGCTACCATTGTAATACAACCTCAGTCCATTG
CAAGATGTTTTATTATTATAAATTATTACTTAATATATTCTCCGTTCCGA
CTGGCTCCCTCAAGCTTTTTGATACCCTGTTTTTCATGCTTGCTTTTATT
ACCCCCATTGCTAGAACATTATTATCCCTCTGATCCTATGCTATGTTCTT
AATTATACATCGTTCTTATACTCCTCCCTCTACACTTTTTTTTTACATCC
TCGTTTTATCAATTACTCCCTTACATCCACAATTATGTTATGTTTTTGCG
TGCTACCACCTATTCCTTACTCGCTCTCATAGTTTAATATTCTGTAACTT
ATAATTTATATGTTCTTCTACT
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTATGCATGAACTCAGCAAGCT
TTGCAGAAACTTGTACCCATGCCTGGATCTCTCCTTGCCTCTGGAACCCA
AAGGCAAACACTGAAGTCTCAGCCTCCAAGGACTTGCATGCTTGGGTTCA
ATTAATTTTCTGTCTTCCACAGATTTCTCTTTTCATTACCTTATGCTTTG
CGACATCAGGAGAAGGTGACAGTCCCCCCACTCCGCCCCCCTCCCCCGTT
TTGGCAGCAAGAAATCTTTCACGTCTGATTTCAGTTACTAATGTCACGAT
GCCATAGTGTAGAAAATGTTTGGCACCGCCCCCCCCAAGAAAATCTTGCT
TGTTAATTTAAGCCAAACAGTTTAGGCTTCAGAGAACACATCATATCCTG
GAGAAAACAGACATCCCAGGCATCCGTGAAATCTGTTAGGAGATGGAACT
GGTTAAAACGATGCAAGGCTTCCACCTGTAACAACCTTGCATTACTCAAG
GATACTTGTGAGAAAGAGTGGGAGTGTTGTCTGTCACTCCAGACAAGAGC
TATTTCTAAGACCTGCAGAGGAGAGCCCTGAATTGCACTTAGTCAAAAGT
ACTCTTTTTTTTTTTTTTTAACTATTCGCTGAAAGGACTAAAAGGAGATG
CACATTTTGGCCAGAGTGGGAAAAAAAATCATTAATAACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_e15.b1 MSMg01no198_e15.b1 CHROMAT_FILE:
MSMg01no198_e15.b1 PHD_FILE: MSMg01no198_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:28 2005
         (255 letters)



>mm_chr1_80578279_80578933
          Length = 655

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaggtgtgcctactgcaatcaaactttccccatacatatcatctgcaggatca 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaattcacaggtgtgcctactacaatcaaactttccccatacatatcatctgcaggatca 396

                                                                       
Query: 65  taggggcccaaagccacaccaggatcacctcgcagattcttgtactctgtctcatttaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taggggcccaaagccacaccaggatcacctcgcagattcttgtactctgtctcatttaaa 336

                                                                       
Query: 125 cttataaatgattaacagactgtttaattttctttaaagtcaatcaggactaccactaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cttataaatgattaacagactgtttaattttctttaaagtcaatcaggactaccactaaa 276

                                                                       
Query: 185 ataaatgttcgttctcatatctgtacatctaaagatactcagtgcagagatatctaagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 275 ataaatgttcgttctcatatctgtacatctaaagatactcagtgcagtgatatctaagat 216

                      
Query: 245 tctcatgctgt 255
           |||||||||||
Sbjct: 215 tctcatgctgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no198_e15.g1 MSMg01no198_e15.g1 CHROMAT_FILE:
MSMg01no198_e15.g1 PHD_FILE: MSMg01no198_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:28 2005
         (289 letters)



>mm_chr1_80490675_80491363
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttatgcatgaactcagcaagctttgcagaaacttgtacccatgcctggatctctcctt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ttttatgcatgaactcagcaagctttgcagaaacttgtacacatgcctggatctctcctt 260

                                                                       
Query: 61  gcctctggaacccaaaggcaaacactgaagtctcagcctccaaggacttgcatgcttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctctggaacccaaaggcaaacactgaagtctcagcctccaaggacttgcatgcttggg 320

                                                                       
Query: 121 ttcaattaattttctgtcttccacagatttctcttttcattaccttatgctttgcgacat 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaattaattttctgtctttcacagatttctcttttcattaccttatgctttgcgacat 380

                                                                       
Query: 181 caggagaaggtgacagtccccccactccgcccccctcccccgttttggcagcaagaaatc 240
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 381 caggagaaggtgacagtccccccactccacccccctcccccgttttggaagcaagaaatc 440

                                                            
Query: 241 tttcacgtctgatttcagttactaatgtcacgatgccatagtgtagaaa 289
           |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tttcacgtctgatttcagttactaatgtcaagatgccatagtgtagaaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)