BAC Information

Click to search

BAC

Clone NameMSMg01-198F16
Chromosome1 (Build37)
Map Location 51,113,733 - 51,113,972
singlet/doubletsinglet
Overlap geneTmeff2
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198F16.T7 (MSMg01no198_f16.b1)MSMg01-198F16.TJ (MSMg01no198_f16.g1)
ACCAG385725
length738802
length of high quality
(start - end)		---240 (134 - 373)
definitionCHROMAT_FILE: MSMg01no198_f16.b1 PHD_FILE: MSMg01no198_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:33 2005CHROMAT_FILE: MSMg01no198_f16.g1 PHD_FILE: MSMg01no198_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

GGGGCGTGCCCGTTCGGGTCTGTTACTTCTTTTCTCTTTTTATTTAATTT
NNNNCATCTAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATGCATATCTGTAT
TTTTAGATCAGATAAAATGAGTAAGAAGTTCTTTCCCTGAAAAATATAGA
GTGTGACTCAAAGAAAATGATAATGAAATGAAATACTTAAGGCCTTGTGA
AGTATTAATAAGCAGCAACTAAATTTGTCTGTATGCTTGAATCTCTAATT
TTGTGTCTCTGAAGTGGTGGTCTGATGAGGTTGGGCCCACGCACGCAGGC
AGCGATTTTTGGAGGGAAGAGTAAAGTTTTTTTTAGAACTGACTGCACGA
GGAAGAGCCTGGTTTTTTTGTTGTTTCCCCCCCCCCCCCCCCGGATTTTT
GAGGATAATGGGTTTTNTTTTGGCCCCACATTTCCCATTCCTATACCGGG
TGGGGGGGGGAGGTGGTTTCTGTCCTGATTTTTAAATTCTATGTCTTATG
CATGGGTTATATTTTTTGATCAGCATTAGACTCATCAACTGTTCCAAAAA
TGAAAGTCAATTATTTCCGAGTACGAGGTTATAAATCACATGCTGTAGTT
TTAAAATGGAAATTACTAATAAGATAAAAGTTTGTTGACTTTAAAGATGA
AATTGATTCCATGGCGAGGGAAGAGATATTTTTTATCTGTATTTGACGGT
ATGTCGGTTATATTTTTTCTTTCCGTCTTGTGAACTCTATCTGGGATGTA
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_f16.g1 MSMg01no198_f16.g1 CHROMAT_FILE:
MSMg01no198_f16.g1 PHD_FILE: MSMg01no198_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:34 2005
         (240 letters)



>mm_chr1_51113533_51114172
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatgcatatctgtatttttagatcagataaaatgagtaagaagttctttccctgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaatgcatatctgtatttttagatcagataaaatgagtaagaagttctttccctgaaaa 381

                                                                       
Query: 61  atatagagtgtgactcaaagaaaatgataatgaaatgaaatacttaaggccttgtgaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atatagagtgtgactcaaagaaaatgataatgaaatgaaatacttaaggccttgtgaagt 321

                                                                       
Query: 121 attaataagcagcaactaaatttgtctgtatgcttgaatctctaattttgtgtctctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attaataagcagcaactaaatttgtctgtatgcttgaatctctaattttgtgtctctgaa 261

                                                                       
Query: 181 gtggtggtctgatgaggttgggcccacgcacgcaggcagcgatttttggagggaagagta 240
           ||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 260 gtggtggtctgatgaggctgggcccacgcatgcaggcagcgatttttggatggaagagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |