BAC Information

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BAC

Clone NameMSMg01-198L10
Chromosome1 (Build37)
Map Location 97,351,061 - 97,351,347
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666025, LOC100040685, LOC383603, Tmem157
Downstream geneLOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198L10.T7 (MSMg01no198_l10.b1)MSMg01-198L10.TJ (MSMg01no198_l10.g1)
ACCAG385927AG385928
length791732
length of high quality
(start - end)
274 (46 - 319)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no198_l10.b1 PHD_FILE: MSMg01no198_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:01 2005CHROMAT_FILE: MSMg01no198_l10.g1 PHD_FILE: MSMg01no198_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGGTTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTATAG
TATCCTGGGCTGGCATTTGTGTTCTCTTAGGGTCTGCATAACATCTGTCC
AGGATCTTCTGGCTTTCATAGTCTCTGGTGAGAAGTCTGGTGTAATTCTA
ATAGGTCTACCTTTATATGTTACTTAACCTTTTTCCCTTACTGCTTTTAA
TATTCTGTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGCATTTGTTGTTCT
GATTATTATGTGTTGGTAGTTATTTCTTATCTGATCCACTCAATATGGAA
ATTTTTTTTTTTTCCCCCGACAACCCCCTTTTATTTTTTTTTATTTATTT
TTTAGTTTCNCCCCCCCCAAAAAAAAAAAAAAATTTTTTGGGGGTGGTAG
GCTTACTTATCTTTATTCTCCTGTGTGTCTCTCTCGCTCTGCTTCATTTC
ACTTTTTTCTTTTTTTTCCCTTCCTCTTATTTGCTCTATTTCTCTTTTAT
CAAACCTTTATTCTAAATTTTATACATATAGTCTATTTCCTGCCCCTTAG
TTCTTTTCTGTAAAAATTTTATTTGTATCTTCAAATTAACTCAAAGCTTT
ACTATCCTTACTTTGTATTTATTTTTACACGTTCTATTTCTTATTAATTT
AACTTACCCTTCTTTCCATAAAACTTATGTTTTACATACTATCTCTATTC
GTTACTTCATATCATATATGAATTTTTATATATTTTCCATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTAAGTTTCCAGATAGCTTAC
AGTTTGAGTAGAACAAGTTTGAAATGGGTGTTTTAAACATTTCAATTCAG
TTCACTTAGTTTCAACAAACACAGGAAGGTACTGCTTTAGGACATAAGAG
CAAAAACAAAAGATGAAAGTTTGTTGTCAAAGGAATTGGGAATCACTTGA
TTTAGGTGAGTGCACAGAAAAAAAAAATTGTGTATAGCAAATCCTAAGTA
TTTTGTCACTAGACATTATAGGGTGTGATTTATAGTGATATTAACTTGCT
TCTATAGTAGGTGACTTTTCTCATCCCCCCCCCCCCTATCACTATATAAT
ACAATTTTATAATATATAGNACCGCATAACTTTATATAAATGTTATATAA
TTAGAAACATAATAACCCTGAGTAGAGTAAAGGAAAATCATAGGTAAAGA
GATCAAGTAGGGAGACTGTGTGAGAAGAACTATGTTAGATTTAATTCAGA
CTCTGGTGTGTGCAGAACTTTCACCTGTCCCAGGAGACCATGAGACATTG
TATCAATAGTCAGAAAATGTGTATCAGTTAATTGGCTAGTGAATTATTAA
TGAATACAACCACTTAACCCTAGGAATTCATACCTGACCCCTTAGAGAAA
AGAGTAGGGGCAACCCCTGTGACCCTGATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_l10.g1 MSMg01no198_l10.g1 CHROMAT_FILE:
MSMg01no198_l10.g1 PHD_FILE: MSMg01no198_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:02 2005
         (287 letters)



>mm_chr1_97350861_97351547
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtaagtttccagatagcttacagtttgagtagaacaagtttgaaatgggtgttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ttagtaagtttccagatagcttacagtttgagtagaacaagtttggaatgggtgttttaa 260

                                                                       
Query: 61  acatttcaattcagttcacttagtttcaacaaacacaggaaggtactgctttaggacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatttcaattcagttcacttagtttcaacaaacacaggaaggtactgctttaggacata 320

                                                                       
Query: 121 agagcaaaaacaaaagatgaaagtttgttgtcaaaggaattgggaatcacttgatttagg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagcaaaaacaaaagatgaacgtttgttgtcaaaggaattgggaatcacttgatttagg 380

                                                                       
Query: 181 tgagtgcacagaaaaaaaaaattgtgtatagcaaatcctaagtattttgtcactagacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtgcacagaaaaaaaaaattgtgtatagcaaatcctaagtattttgtcactagacat 440

                                                          
Query: 241 tatagggtgtgatttatagtgatattaacttgcttctatagtaggtg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagggtgtgatttatagtgatattaacttgcttctatagtaggtg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)