BAC Information

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BAC

Clone NameMSMg01-199B15
Chromosome1 (Build37)
Map Location 69,684,830 - 69,685,028
singlet/doubletsinglet
Overlap geneIkzf2
Upstream geneErbb4, LOC667842, EG241084
Downstream geneSpag16
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199B15.T7 (MSMg01no199_b15.b1)MSMg01-199B15.TJ (MSMg01no199_b15.g1)
ACCAG386167AG386168
length792822
length of high quality
(start - end)
202 (45 - 246)41 (88 - 128)
definitionCHROMAT_FILE: MSMg01no199_b15.b1 PHD_FILE: MSMg01no199_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:33 2005CHROMAT_FILE: MSMg01no199_b15.g1 PHD_FILE: MSMg01no199_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGGGCACGAACATAGTCCCTGTTTCCAGGTATGCCCTATCAATG
TTTCAAGCAATACCCAGTACTGTGAGTCCTGTCCACTGAAAGTAACCGGC
CACCAAATGAAGCAAAACTCTCAGACACCTCCTCCTCATTCTCTTCCTTT
CGTTTTCATTCTTTATAGGTATTTGGGGGAAGGCTCTGGTTTGTACAGTT
AGAAAATGTGNAAAACAAGATTACAANNCCNGGTGAAAGAAGAACTTCTC
CCCCCCCCCANAAAAGAATTTTTTGGCCAAGGAAAACGAAAAACTGAGCT
AATGACTGTTGNNNNNNNNNNNNNNNCNTGTTAAGAAAGGGTTTAAAGAA
GGTTTGGCCCCCCCCCCCTTNNNNGGNGGATGAATTTGAAATTTTTCTCT
TNNNNNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNTNNTACCCTTTTTT
TNNNNTTNTNNNTTTTTTAACCTCTTTTTTTCTTTTTTTTNNNANANNNC
CTTGACACGATCTTGAGAGAAAACTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNANAAAGAAAAANTTTCTTNNNNNNNN
NTTTNNNNTNCTTTTTATTTTTNNTCTTCTNTTTTTNNTTNTTTTTTTTT
TTTTTTTTATTTTTTTTATTTTTTTTATTTTTTTATTAAAAAAGAAAATA
TTCTTTNNNNNTNAAANNTTANAAAAAAAATAATGTGATGTT
ACCCAACCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGAATGGGGAA
AGGAATGGTATATTAGGTGGAGAGGNNNNNNNNNCCCNNNNNNGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCNNCNCCCCCCCCCCCCCCCCTTTTTTTTTTCCCC
TTCCTCCCCCCTCCTTCTTTTCCCTCTCTTTTTTTTCCCCCCCCCCTCTC
CCCCCGTTTTTTTCTTCTTTCTTTTTTTTTTTGGTTTGCCCCCCCCCCCC
NNNNTTNNNNNTTTTTTTCTTTTTCCCCCTCCCCCCCCCTCCCCCTCTTC
TCTCCTCTCGTTCGTCTTGTCTTCCTTCTTTTTTTCTTTCCCCTTTCCCC
TCCCCCCTTTTCTTTTTCTCCGTTTTCTCCCCCTCCTTTTTCCCTCGCCC
CCTTTTCCCTCTTTTTCTTCCTCCTTCTGCCCTCCGTTTCCCTCTCCCCT
TTCTCCCCCCTTTCTCCTCCCTTTTTTTTCTCTCTTTTCTTCCTTTTCTC
CCCCCCTTTTCTCCCCCCTTTTTTTTTTTCTCCCCCCCTCTCTCTTTCCT
CTCTCCTTTTTTCCCTCTCCCCTCCTTTGCTCCTGTTTTTGCCCTTGTTT
TCTCCCGTCCTTCTTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_b15.b1 MSMg01no199_b15.b1 CHROMAT_FILE:
MSMg01no199_b15.b1 PHD_FILE: MSMg01no199_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:33 2005
         (202 letters)



>mm_chr1_69684626_69685228
          Length = 603

 Score =  362 bits (187), Expect = e-104
 Identities = 196/199 (98%), Gaps = 1/199 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgggcacgaacatagtccctgtttccaggtatgccctatcaatgtttcaagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattcactgggcacgaacatagtccctgtttccaggtatgccctatcaatgtttcaagc 344

                                                                       
Query: 65  aatacccagtactgtgagtcctgtccactgaaagtaa-ccggccaccaaatgaagcaaaa 123
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 343 aatacccagtactgtgagtcctgtccactgaaagaaacccggccaccaaatgaagcaaaa 284

                                                                       
Query: 124 ctctcagacacctcctcctcattctcttcctttcgttttcattctttataggtatttggg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 283 ctctcagacacctcctcctcattctcttcctttcgttttcattctttataagtatttggg 224

                              
Query: 184 ggaaggctctggtttgtac 202
           |||||||||||||||||||
Sbjct: 223 ggaaggctctggtttgtac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 603
Length adjustment: 8
Effective length of query: 194
Effective length of database: 595
Effective search space:   115430
Effective search space used:   115430
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)