AACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCC
GCGGAATTCAACTCTTCCCCTCTGGAAGAGCAGTCAGTGCTTTTAACCAC
TGAGCCATCTCTCCAGTCAACAATGAAGTATTTCTTAATGAGCTTGCTTG
GCATAACTTGTACAATACCTCCCAATAGCTTTCCTATCTTCTATCTATTG
TTTTTAATCTTATCTCCTCACTGCCTCCCTCTTAGGACTCTTACACTGAA
AAATGATCTGCCAGTCCATGCAAGAAAGCAGATGCTTCCATCTTGCTCCT
CTTGAACCCCCATAACCAAAACAAAACAAATCTCCACTTTTTGTAAATAT
GCAGCTTCAGGCATATTGATACAGCAGGAGAAAATGAATGAAGAGAGTTT
TCTGTAGCTATTTTCCCCCCTATGGTCCAACTATATTGCACAGCTTTGCT
TCAAATTCTTATCTGCTTTCAAGGTTTCCCATCAAATGTACACAGCACTG
TAAACCATTACTTTTTATCCCACGTAACATGTGCTCATACAGTCTTCCCA
TGATTTGTATCTACATGCATCTCTAATGAGCAGTGCAGGAAAATATTTAC
ATTAGGATTTGCAAAGATGATAGCTTAAACTGCGGCTCATACGGATGGAG
TTGTGCAGGCCAAATACCTATCATATTTACCTAATATTTCCTCTTGTAAC
TAATATACACAGAGCTGGAACACTTGTTATTGTATTCC

CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACACTGAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACATATGCTCCACCACCCCCACAGCAGCATTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAATAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGCACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGATCTGGAGGGCATCATCCT
GAGTGAGGCATTACATTCACAATGGAACTCATTCATTACGCACCCTCTGA
CAAGTGAATATTAGTCCAAATTCTATGACATTTAAGACATTATACACCAT
TTTCTAAATTTATGACATTCTAATATAAACGAACATTGAATTGTGCAT

Query= MSMg01no199_i16.b1 MSMg01no199_i16.b1 CHROMAT_FILE:
MSMg01no199_i16.b1 PHD_FILE: MSMg01no199_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:08 2005
         (594 letters)



>mm_chr1_3212741_3213734
          Length = 994

 Score = 1073 bits (555), Expect = 0.0
 Identities = 567/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 24  ctctggaagagcagtcagtgcttttaaccactgagccatctctccagtcaacaatgaagt 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ctctggaagagcagtcagtgcttttaaccactgagccatctctccagtcaacaatgaagt 283

                                                                       
Query: 84  atttcttaatgagcttgcttggcataacttgtacaatacctcccaatagctttcctatct 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atttcttaatgagcttgcttggcataacttgtacaatacctcccaatagctttcctatct 343

                                                                       
Query: 144 tctatctattgtttttaatcttatctcctcactgcctccctcttaggactcttacactga 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tctatctattgtttttaatcttatctcctcactgcctccctcttaggactcttacactga 403

                                                                       
Query: 204 aaaatgatctgccagtccatgcaagaaagcagatgcttccatcttgctcctcttgaaccc 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaaatgatctgccagtccatgcaagaaagcagatgcttccatcttgctcctcttgaaccc 463

                                                                       
Query: 264 ccataaccaaaacaaaacaaatctccactttttgtaaatatgcagcttcaggcatattga 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ccataaccaaaacaaaacaaatctccactttttgtaaatatgcagcttcaggcatattga 523

                                                                       
Query: 324 tacagcaggagaaaatgaatgaagagagttttctgtagctattttcccccctatggtcca 383
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 524 tacagcaggagaaaatgaatgaagagagttttctgtagctatttttcctcctatggtcca 583

                                                                       
Query: 384 actatattgcacagctttgcttcaaattcttatctgctttcaaggtttcccatcaaatgt 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 actatattgcacagctttgcttcaaattcttatctgctttcaaggtttcccatcaaatgt 643

                                                                       
Query: 444 acacagcactgtaaaccattactttttatcccacgtaacatgtgctcatacagtcttccc 503
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 644 acacagcactgtaaaccattgctttttatcccacgtaacatgtgctcatacagtcttccc 703

                                                                       
Query: 504 atgatttgtatctacatgcatctctaatgagcagtgcaggaaaatatttacattaggatt 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atgatttgtatctacatgcatctctaatgagcagtgcaggaaaatatttacattaggatt 763

                                          
Query: 564 tgcaaagatgatagcttaaactgcggctcat 594
           ||||||||||||||||||||||| |||||||
Sbjct: 764 tgcaaagatgatagcttaaactgtggctcat 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)