Query= MSMg01no199_l05.b1 MSMg01no199_l05.b1 CHROMAT_FILE:
MSMg01no199_l05.b1 PHD_FILE: MSMg01no199_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:21 2005
(368 letters)
>mm_chr1_192806123_192806891
Length = 769
Score = 509 bits (263), Expect = e-148
Identities = 296/307 (96%), Gaps = 3/307 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggaaaagtccccattaagcctaagttgatagcctcactaggggccgagaa-ca 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcaggaaaactcaatattaagcctaagttgatagcctcactaggggccgagaaaca 264
Query: 64 gcacagcccctctgctctgagaagtaggtttccagatccagccagagtccctcacacagc 123
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 265 gcacagcccctctgctctgagaagtagttttccagatccagcctgagtccctcacacagc 324
Query: 124 tgagaagacagagataaccccttctctggagaagtcaaccctgaacccagactcagggat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagaagacagagataaccccttctctggagaagtcaaccctgaacccagactcagggat 384
Query: 184 cctgaacagctcaggcaaacaaccccatgagaaaaattagtcatgtgtgtcccccacccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgaacagctcaggcaaacaaccccatgagaaaaattagtcatgtgtgtcccccacccc 444
Query: 244 aacgcaaggcaagagtcagcataaataagtcattagaatctgaactcagcagtcgaa-ta 302
|||||||||||||||||||||||||||||||||||||| |||||||||| |||| || ||
Sbjct: 445 aacgcaaggcaagagtcagcataaataagtcattagaaactgaactcagaagtc-aacta 503
Query: 303 taacatg 309
|||||||
Sbjct: 504 taacatg 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 769
Length adjustment: 9
Effective length of query: 359
Effective length of database: 760
Effective search space: 272840
Effective search space used: 272840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_l05.g1 MSMg01no199_l05.g1 CHROMAT_FILE:
MSMg01no199_l05.g1 PHD_FILE: MSMg01no199_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:21 2005
(513 letters)
>mm_chr1_192866337_192867249
Length = 913
Score = 907 bits (469), Expect = 0.0
Identities = 503/515 (97%), Gaps = 2/515 (0%)
Strand = Plus / Minus
Query: 1 actgtccctaagtgctggggttacaagtgttcaccatgacaccaggccagtttcttttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 actgtccctaagtgctggggttacaagtgttcaccatgacaccaggccagtttcttttat 520
Query: 61 agttaatgtttctaaataatttgcagacattgaagactgatgaaagagagtttatttgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agttaatgtttctaaataatttgcagacattgaagactgatgaaagagagtttatttgtg 460
Query: 121 tgtctctggagatatacttcatccaaatatggcattatctgaaagataagaaaatgcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 459 tgtctctggagatatacttcatccaaatatggcattatctgaaagataagaaaatacatt 400
Query: 181 tattgggctggtggagatgactcagctgttaaaggctaggctcataatcaaaacatcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tattgggctggtggagatgactcagctgttaaaggctaggctcataatcaaaacatcaga 340
Query: 241 aatatttgtatttcggaaatctaatctattgcacagtttctagaataacaccaagggcag 300
|| | || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 339 aagaaatgcatttcggaaatctaatctattgcacagtttctagaataacacgaagggcag 280
Query: 301 agaggccattactcttctgcttgtcctttcctgtgctgggaccaatgatagtcactgcat 360
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 279 agaggccattactcttctgcttgtcctttcctgtgcggggattaatgatagtcactgcat 220
Query: 361 attttagacaggcagatacagagagagagagagacagac--agacagagaggcagagagg 418
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 219 attttagacaggcagatacagagaaagagagagacagacagagacagagaggcagagagg 160
Query: 419 gagacagagagacacagacagagacgcagagacaaagagctaggagaagagccaagtttc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gagacagagagacacagacagagacgcagagacaaagagctaggagaagagccaagtttc 100
Query: 479 caaggtgggagcaagcactgacatgtcccagaaga 513
|||||||||||||||||||||||||||||||||||
Sbjct: 99 caaggtgggagcaagcactgacatgtcccagaaga 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
