Query= MSMg01no201_e06.b1 MSMg01no201_e06.b1 CHROMAT_FILE:
MSMg01no201_e06.b1 PHD_FILE: MSMg01no201_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:17 2005
(705 letters)
>mm_chr1_89496561_89497661
Length = 1101
Score = 1112 bits (575), Expect = 0.0
Identities = 656/693 (94%), Gaps = 22/693 (3%)
Strand = Plus / Minus
Query: 18 gaattcattatagtaaaaactcccttgctaaatgtgcagaatacatcctgctttggatgc 77
|||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 917 gaattcgttacagtaaaaactccattgctaaatgtgcagaatacatcctgctttggatgc 858
Query: 78 tagcgctagtaaaaatagtgtccac-gcggggtgggggcgggggaactggtgaaatcaga 136
||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 857 tagagctagtaaaaatagtgtccacgggggggtgggggcgggggaactggtgaaatcaga 798
Query: 137 atacagtccagagtctagttagtctcacaccagtgcaaatgtctcagccgacaaacgtac 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atacagtccagagtctagttagtctcacaccagtgcaaatgtctcagccgacaaacgtac 738
Query: 197 cacagttatgtaagacttcaacttgagggtaactggtgagctgtacatgaggacgctctg 256
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||
Sbjct: 737 cacagttatgtaagacttcaacttgagggtaactggtgtgctgtacgtgaggacactctg 678
Query: 257 ctccgtctttgtaacttttttctgtaaacctaaaa-tccttccaaaataat---aaaaaa 312
|||||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 677 ctccgtctttgtaatttttttctgaaaacctaaaactccttccaaaataataaaaaaaaa 618
Query: 313 ttagatttcatttcagagcttcaaaatccagtatagtaagtcactgctgaagttaaattg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttagatttcatttcagagcttcaaaatccagtatagtaagtcactgctgaagttaaattg 558
Query: 373 ttcactttaatgtcttcttcattaggacacaatgcagtcacatgcagtcagctatccaac 432
|||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 557 ctcactttaatgtcttcttcattaggacacaat--a-t-acatgcagtca---------- 512
Query: 433 ctggctctgtacagatcacagaattcatctctggaacagaccacctaagcagctatgggc 492
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 511 ---gctctgtacagatcacagaattcatctctggagcagaccacctaagcagctatgggc 455
Query: 493 aaagtagcaacagtacttcaggcacccagaattctccctcttcctctcttccaggtgact 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaagtagcaacagtacttcaggcacccagaattctccctcttcctctcttccaggtgact 395
Query: 553 gctccctcattggaagtacccagtgtcctgactgacttgctatagattcctttctttgcc 612
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 394 gctccctcattggaagtacccagtgtcctgactgacttgttatagattcctttctttgcc 335
Query: 613 tgtccccttcatagaaattgcagtctcttgtcaagtatgttctatgtcagcttccatctc 672
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtccccttcataggaattgcagtctcttgtcaagtatgttctatgtcagcttccatctc 275
Query: 673 tcggtgcactgtgtgaaagttacgaatgccaca 705
|| ||||||||||||||||||||||||||||||
Sbjct: 274 tcagtgcactgtgtgaaagttacgaatgccaca 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1101
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1091
Effective search space: 758245
Effective search space used: 758245
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no201_e06.g1 MSMg01no201_e06.g1 CHROMAT_FILE:
MSMg01no201_e06.g1 PHD_FILE: MSMg01no201_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:18 2005
(563 letters)
>mm_chr1_89468615_89469578
Length = 964
Score = 1067 bits (552), Expect = 0.0
Identities = 561/564 (99%), Gaps = 1/564 (0%)
Strand = Plus / Plus
Query: 1 tttac-gaggcttctgcttcccccaggaacttcctgttctagtcattaagatcccaaccc 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacagaggcttctgcttcccccaggaacttcctgttctagtcattaagatcccaaccc 260
Query: 60 ctcatccctaggaacttgaaacacttagctagagtgagagcgggaacaagtgctcacagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatccctaggaacttgaaacacttagctagagtgagagcgggaacaagtgctcacagt 320
Query: 120 caacccatcagctatttcaccaacagaagctcaccatgggacattctttaaaagacctct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacccatcagctatttcaccaacagaagctcaccatgggacattctttaaaagacctct 380
Query: 180 cattaatgttcaaactcactgtggtatccctggcagtggggccacagggactgctgctac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattaatgttcaaactcactgtggtatccctggcagtggggccacagggactgctgctac 440
Query: 240 cgttaggaaacaggacaggctgggtgtctccctatcctggggaccatgtccatgaaaatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgttaggaaacaggacaggctgggtgtctccctatcctggggaccatgtccatgaaaatc 500
Query: 300 tgtggttgttcaaagagtggcctgagagtatggttgaggaagatggcctattgtccattt 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 tgtggttgttcaaagagtggcctgagagtgtggttgaggaagatggcctattgtccattt 560
Query: 360 tcattgtccaggatgctggagtctccaaggagactctggcttctcctttctgagactaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattgtccaggatgctggagtctccaaggagactctggcttctcctttctgagactaag 620
Query: 420 taacatcaaatgtgggccaagatgaagaaagggggaggggaaaggaaaacacagtggggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacatcaaatgtgggccaagatgaagaaagggggaggggaaaggaaaacacagtggggg 680
Query: 480 gacccaaccagagccttaatgtctctctgcattaagacagccatttctctcaaggtaaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 gacccaaccagagccttaatgtctctctgcattaagacagccatttctctcaaggcaaca 740
Query: 540 agacattggtcactagctgagata 563
||||||||||||||||||||||||
Sbjct: 741 agacattggtcactagctgagata 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 964
Length adjustment: 10
Effective length of query: 553
Effective length of database: 954
Effective search space: 527562
Effective search space used: 527562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
