Query= MSMg01no202_a03.b1 MSMg01no202_a03.b1 CHROMAT_FILE:
MSMg01no202_a03.b1 PHD_FILE: MSMg01no202_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:39 2005
(186 letters)
>mm_chr1_69103117_69103714
Length = 598
Score = 302 bits (156), Expect = 1e-86
Identities = 186/198 (93%), Gaps = 12/198 (6%)
Strand = Plus / Plus
Query: 1 accttgaaaactctgaactttacctttcc-cctatttctcttacata--tgacaaagtct 57
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 201 accttgaaaactctgaactttacctttccacctatttctcttacataaatgacaaagtct 260
Query: 58 tag-catgagcatctgaa-gttcactaagaccatcc--cctaacagt-aatga--gaaga 110
||| |||||||||||||| ||||||||||||||||| ||||||||| ||||| |||||
Sbjct: 261 taggcatgagcatctgaaagttcactaagaccatccaccctaacagttaatgaaagaaga 320
Query: 111 taatgcccaacttaaacaagatggccagatcttg-catcctatgtttgtgttcctcaaag 169
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 taatgcccaacttaaacaagatggccagatcttgtcatcctatgtttgtgttcctcaaag 380
Query: 170 agccactgtgcc-atata 186
|||||||||||| |||||
Sbjct: 381 agccactgtgcccatata 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 598
Length adjustment: 8
Effective length of query: 178
Effective length of database: 590
Effective search space: 105020
Effective search space used: 105020
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no202_a03.g1 MSMg01no202_a03.g1 CHROMAT_FILE:
MSMg01no202_a03.g1 PHD_FILE: MSMg01no202_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:39 2005
(513 letters)
>mm_chr1_69116955_69117868
Length = 914
Score = 986 bits (510), Expect = 0.0
Identities = 513/514 (99%), Gaps = 1/514 (0%)
Strand = Plus / Minus
Query: 1 ttttacttactgtttcctagaaatacatgggcgagtcaacaaaatg-aaaaaaaattaat 59
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 556 ttttacttactgtttcctagaaatacatgggcgagtcaacaaaatgaaaaaaaaattaat 497
Query: 60 taacttttagggccgcttttgaaaacagccctgtagtagtcatttatatgttaatatttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 taacttttagggccgcttttgaaaacagccctgtagtagtcatttatatgttaatatttt 437
Query: 120 acaatgactaatttaatagacagatggtagttgatattacagtacgagagtcaggcattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acaatgactaatttaatagacagatggtagttgatattacagtacgagagtcaggcattt 377
Query: 180 ccctgggcctaatgattatctacctagttttcaattagagaagatggccaattatctaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccctgggcctaatgattatctacctagttttcaattagagaagatggccaattatctaga 317
Query: 240 gtgggttttattttaattacctagtgattaggccagctaggtaaccagccccaaggaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtgggttttattttaattacctagtgattaggccagctaggtaaccagccccaaggaaag 257
Query: 300 agaactcaactgtgtgtgagtgaattcctacaatgtgcacctaccataggtttgttttcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agaactcaactgtgtgtgagtgaattcctacaatgtgcacctaccataggtttgttttcc 197
Query: 360 cttcttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cttcttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 137
Query: 420 ttccttccttccttccttccttccttccttccttcctccctccctccctccctccctccc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttccttccttccttccttccttccttccttccttcctccctccctccctccctccctccc 77
Query: 480 tccttccctctctttctctctctctccttttttt 513
||||||||||||||||||||||||||||||||||
Sbjct: 76 tccttccctctctttctctctctctccttttttt 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
