BAC Information

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BAC

Clone NameMSMg01-202D15
Chromosome1 (Build37)
Map Location 56,801,177 - 56,801,398
singlet/doubletsinglet
Overlap genenone
Upstream gene9130227L01Rik, Hsfy2
Downstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202D15.T7 (MSMg01no202_d15.b1)MSMg01-202D15.TJ (MSMg01no202_d15.g1)
ACCAG387465AG387466
length711786
length of high quality
(start - end)
---222 (190 - 411)
definitionCHROMAT_FILE: MSMg01no202_d15.b1 PHD_FILE: MSMg01no202_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:57 2005CHROMAT_FILE: MSMg01no202_d15.g1 PHD_FILE: MSMg01no202_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGT
GAATCTACGTTTTCCCCAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXX
TTGTTGTGTTGGTTCTTTTTACTTTTTTTACTTCCTGTTCACCCCATATA
ACAAACCACACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAA
AAAGGTGAGGTGAACTATAGATTTCTCAGAAAAGGTCGATGGATTTCTGC
ATTCTCATAGACTAGACTCTGGGTTCTCTTACCTCCACAATTAGTTTTAT
TCCCAGGATTCAGTAGAATGCTCTAGAAACACATATCTCTACAACAGGAA
GGCAAGTGGATGGTTGGGACCCCATGGTTACTTAGATGTTTTGGACCTCA
AATGCTCTAGTATAATGCTTCTCTTAATTATACTTTAGAAATGGAAGAAA
AAAATGAATGAGTATCTTTTGATGATTGTTTTTTTTATGAAAGTGATGAC
TTTAAATGGGGAAATGAGTTTAATATCCATGATTAAAGCTCTCTGGTATT
GATTGGGTGGAGCTTTGAAAGGGTCACCCCACATGCGCATTAAGTGTTTA
GAAGAATAACTAGAAGATTAGGTAGAAGAGATCTGCATCACCCTTATCCA
TACCCAAGATGAGAAGACAAAGAAAGATATAGAGTGGGAGGGGAAAATAA
GTGAAAGAAAGTAAAGGGGAAGGTGAGGCAATCTTTTTTTAATTTTATAT
TGTTTTTAATTATTCAGACTGTGGCATAATTCGTCTTTGTTTACTTCTTT
CGTATTCTATGTTGGCTTGTTTATGAGGATTTGATGTAAAGTATATAGAT
TAAATTGATAAATAATATTGGAGATATTTTATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_d15.g1 MSMg01no202_d15.g1 CHROMAT_FILE:
MSMg01no202_d15.g1 PHD_FILE: MSMg01no202_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:57 2005
         (222 letters)



>mm_chr1_56800977_56801598
          Length = 622

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagttttattcccaggattcagtagaatgctctagaaacacatatctctacaacagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagttttattcccaggattcagtagaatgctctagaaacacatatctctacaacagga 260

                                                                       
Query: 61  aggcaagtggatggttgggaccccatggttacttagatgttttggacctcaaatgctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaagtggatggttgggaccccatggttacttagatgttttggacctcaaatgctcta 320

                                                                       
Query: 121 gtataatgcttctcttaattatactttagaaatggaagaaaaaaatgaatgagtatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtataatgcttctcttaattatactttagaaatggaagaaaaaaatgaatgagtatcttt 380

                                                     
Query: 181 tgatgattgttttttttatgaaagtgatgactttaaatgggg 222
           ||||||||| |  |||||||||||||||||||||||||||||
Sbjct: 381 tgatgattgctcattttatgaaagtgatgactttaaatgggg 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)