Query= MSMg01no202_f05.b1 MSMg01no202_f05.b1 CHROMAT_FILE:
MSMg01no202_f05.b1 PHD_FILE: MSMg01no202_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:06 2005
(234 letters)
>mm_chr1_79352243_79352876
Length = 634
Score = 445 bits (230), Expect = e-129
Identities = 233/234 (99%)
Strand = Plus / Minus
Query: 1 attattaaaacaatactaattagtcatactgttcatcataggacactaggacttatttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 attattaaaacaatactaattagtcatactgttcatcataggacactaggacttatttct 281
Query: 61 tctatctgtttttatgtgtaccttatctaactctttattgatccttgccaaatttctatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 280 tctatctgtttttatgtgtaccttatctaactctttattgatccttgccatatttctatt 221
Query: 121 taaaaacacatttcttgctaattctttgatgatttcttacatacatacaatgtattttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 taaaaacacatttcttgctaattctttgatgatttcttacatacatacaatgtattttga 161
Query: 181 tcatatccatcaccctcccattttccccactaacctctctccagtatgtctcac 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tcatatccatcaccctcccattttccccactaacctctctccagtatgtctcac 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no202_f05.g1 MSMg01no202_f05.g1 CHROMAT_FILE:
MSMg01no202_f05.g1 PHD_FILE: MSMg01no202_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:06 2005
(283 letters)
>mm_chr1_79238644_79239327
Length = 684
Score = 474 bits (245), Expect = e-138
Identities = 275/287 (95%), Gaps = 6/287 (2%)
Strand = Plus / Plus
Query: 1 ctgatttggcttcctttgatggactcaggacatgtaatcc---tttaacccctttcctct 57
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 200 ctgatttggcttcctttgatggactcaggacatgtaatccaaat--aaaccctttcctct 257
Query: 58 ccaccttgctttaggtcatggtggtgtttcatcacagcaatgattaccctaactgaaaga 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccaccttgctttaggtcatggtggtgtttcatcacagcaatgattaccctaactgaaaga 317
Query: 118 gcctctgagtaggctacatttttt-acctctttattccatgtttcttgaatagaaactac 176
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 318 gcctctgagtaggctacatttttttacctctttattccatgtttcttgaatagaaactac 377
Query: 177 tgggttcttcagcttttgagtatacagatgacaactgtggagttattcaaccactgcgta 236
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||
Sbjct: 378 tgggttcttcagcttttgattatacagatgacaactgtggagttattcaaccattgtgta 437
Query: 237 tgaaagccagtctggtaaaaaacagctcttacaattatatttatacc 283
|||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 438 tgaaagccagtctggtaaaaaaaacctcttacaattatatttatacc 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
