BAC Information

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BAC

Clone NameMSMg01-202F11
Chromosome1 (Build37)
Map Location 169,393,395 - 169,393,626
singlet/doubletsinglet
Overlap geneLrrc52
Upstream geneEG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3
Downstream geneRxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202F11.T7 (MSMg01no202_f11.b1)MSMg01-202F11.TJ (MSMg01no202_f11.g1)
ACCAG387536
length711688
length of high quality
(start - end)
---232 (105 - 336)
definitionCHROMAT_FILE: MSMg01no202_f11.b1 PHD_FILE: MSMg01no202_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:07 2005CHROMAT_FILE: MSMg01no202_f11.g1 PHD_FILE: MSMg01no202_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATATGCTGTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCTTTTGGAGTTTGGATAGACTATAAGAAATCTGGGTATTTAA
CCGAGTATTGCAATTAAATTTTGATAGTGCCTGTGTAATCAAAGTAAACA
ATCTTTTATGAGTTCTAAGGAGTAGACAGATAAGAAATAAAACTACTTTA
GTTACATTTAACTAACCTGATACAAGATGATAGTTTTATGATTTTCAGAT
TTAAAAGATAATACAGTCTCATAAAGACCTTGCTATAGTGTGGGGCTAAA
ATGTTTCCCGAAGGTCTGTGGAAAAACGTTAACGTTCTATTATCTCCCTG
CCCCTCTCAGTCGGTTGAGGAACCTTTAAGAGGAGGGACTAGGAACGAGT
GCAACTGGCTACATGTCCTTGAAGGGGATGTTGGGACCACAGTCCCTTCA
GCAGCATCTTCTGCTATGGGTCCTCATTGCTTTGCTTTAGGTCTAGAAGC
AGATCATGGAATCTTCAAAACTCCGAGCCCAAATGACTGGATTTTCTCAG
TTTTTTTGCCAACTGGCCCTACACTGCATAGCTCAGACCTCAATTTGAAA
CTGATTTTTTAAATGTGTATTAGTGATGTGATTTTGGCCCAGCCAGCCTA
TGGAGACCTGTGAGGATAAATCACAGAGATTTATCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_f11.g1 MSMg01no202_f11.g1 CHROMAT_FILE:
MSMg01no202_f11.g1 PHD_FILE: MSMg01no202_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:07 2005
         (232 letters)



>mm_chr1_169393195_169393826
          Length = 632

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtattgcaattaaattttgatagtgcctgtgtaatcaaagtaaacaatcttttatgagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtattgcaattaaattttgatagtgcctgtgtaatcaaagtaaacaatcttttatgagtt 260

                                                                       
Query: 61  ctaaggagtagacagataagaaataaaactactttagttacatttaactaacctgataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaggagtagacagataagaaataaaactactttagttacatttaactaacctgataca 320

                                                                       
Query: 121 agatgatagttttatgattttcagatttaaaagataatacagtctcataaagaccttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgatagttttatgattttcagatttaaaagataatacagtctcataaagaccttgct 380

                                                               
Query: 181 atagtgtggggctaaaatgtttcccgaaggtctgtggaaaaacgttaacgtt 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtgtggggctaaaatgtttcccgaaggtctgtggaaaaacgttaacgtt 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)