BAC Information

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BAC

Clone NameMSMg01-202F15
Chromosome1 (Build37)
Map Location 56,801,125 - 56,801,406
singlet/doubletsinglet
Overlap genenone
Upstream gene9130227L01Rik, Hsfy2
Downstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202F15.T7 (MSMg01no202_f15.b1)MSMg01-202F15.TJ (MSMg01no202_f15.g1)
ACCAG387542AG387543
length742733
length of high quality
(start - end)
273 (45 - 317)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no202_f15.b1 PHD_FILE: MSMg01no202_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:08 2005CHROMAT_FILE: MSMg01no202_f15.g1 PHD_FILE: MSMg01no202_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGTCTGAGCTGTTACAAGAAACCATGTAGAAGCCCATATCCTTT
TTCTTTACGTGTGTGTGTGTCGTGTGTGTGTGTGTGCACGCGCGCGCGCA
CGTGCGCGTGCGCTAGCGCAAGTGCATGCGTGCACACCTGCATATGTATG
TGAGTGGGCTTGGAGGCTAGAAGACAGTGTCAGAAATTACATGTGGTTGT
GAGCTGCCTGATGTGGCCACTGCATAGAGAGCAAGTGGTTTTGACAGCTG
GGCCATCTCTCTAGCCTTTCTTTTTTTAAAAATAAGGAAATATTTGTTAA
AAATTATGTTTTGTTCTCCCCGACAAACCCCCATATCATTTGCTAATATA
AGAATCAAATAATTCCACAACACAAAAAAAAGAAACCTAGATTCCCAGTT
GATGACGAAGCATGTATCCTTCCCGTAACTCCAATGATACCTGTGCCCGT
CAGTTGCATCTTGTGATACCTTCACAATACGCTGAGTCCATACTTCTCTC
TCCCCCGACAGTGTAACCCGAATGATATCTTTTACCCCATTGCCCTCAAT
CAACCTTGTTTCCCTCGACTAATTTTTTCCCATTTCATTTTTCCCATTTT
TTTTTTTTTTTTTTTTTCCAATTTGTCTCTTTTTTTCTCCAATTATTTTC
CATACTTCTTCTCATATATATTTCCCTTACATTACGTCTTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGATTTCTGCATTCTCATAGA
CTAGACTCTGGGTTCTCATATATTCACAATTAGTTTTATTCCCAGGATTC
AGTAGAATGCTCTAGAAACACATATCTCTACAACAGGAAGGCAAGTGGAT
GGTTGGGACCCCATGGTTACTTAGATGTTTTGGACCTCAAATGCTCTAGT
ATAATGCTTCTCTTAATTATACTTTAGAAATGGAAGAAAAAAATGAATGA
GTATCTTTTGATGATTGCTCATTTTATGAAAGTGATGACTTTAAATGGGG
AAATGAGCATAATATCCATGATCCCCCCCCTCTGGTATTGATTGGGTGGA
GCTTTGAAAGGGCCACATGATATGTGCATTAAGTGTTTAGAAGAATAACT
AGAAGATTAGGTAGAAGAGACCTGCAGCACCCTTAACCATACCCAAGATG
AGAAGACAAAGAAAGAGATAGAGTGGGAGGGGAAAATAAGTGAAAGAAAG
GGAAGGGGAAGGGGAGGGGGAAGATTTTTTTTTTTTTTTTTTTTTTTTTG
GTTTTTGTGTTTCGTTGGTTTAGGAGTGTTGTTATATTTATTAATTCTTG
CACTTACTCAAGTTAACTCATTATTTCTCACTCTAACCTAAATAATTAAT
AAAATTTTTTACAATATATTTAATTATAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_f15.g1 MSMg01no202_f15.g1 CHROMAT_FILE:
MSMg01no202_f15.g1 PHD_FILE: MSMg01no202_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:08 2005
         (282 letters)



>mm_chr1_56800925_56801606
          Length = 682

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggatttctgcattctcatagactagactctgggttctcatatattcacaattagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggatttctgcattctcatagactagactctgggttctcatatattcacaattagttt 260

                                                                       
Query: 61  tattcccaggattcagtagaatgctctagaaacacatatctctacaacaggaaggcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattcccaggattcagtagaatgctctagaaacacatatctctacaacaggaaggcaagt 320

                                                                       
Query: 121 ggatggttgggaccccatggttacttagatgttttggacctcaaatgctctagtataatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatggttgggaccccatggttacttagatgttttggacctcaaatgctctagtataatg 380

                                                                       
Query: 181 cttctcttaattatactttagaaatggaagaaaaaaatgaatgagtatcttttgatgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctcttaattatactttagaaatggaagaaaaaaatgaatgagtatcttttgatgatt 440

                                                     
Query: 241 gctcattttatgaaagtgatgactttaaatggggaaatgagc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcattttatgaaagtgatgactttaaatggggaaatgagc 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)