CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTATATTCTCCCATAAATCTTTCCCTTTGTTATGTGGTCATTCAC
AATCTAGGATCTCCTTATCTCCCGCTTTTCTGCTCAAGGTTTCATTTTTC
AGCAGGTTCTAGTTGTTTTGAAACACTTGCACTGTTATTTCATGTAGGAT
TGCTTGTTAAAAGAAACTCAAATAACTGAAATAAACCCTTGACCTCTTCC
TTAGCCTTTCTTCAGGCTAGCTCCTAATTAGCCACCTAATGTCAGCTTTT
TATACATGTCCCCTTGTTGACTTGACCCCATTGTAACCTATAATGAGTTT
GTTGCTTTCACTTTTAACAGATTTTACTGGTCTATTTTCAGCCTATTTGT
CTTATATGACTTGAAAAACAAAACTAGGTGTTTGTTAGTAATTATGCAGC
TTTGTATTGGAGGATTCAAAAAGATTTCATAAACAATGTATGGTTTAGAT
TAAAAGGAAACAAGTTTTTATTTTCTCTATTTGAGGACTTCTTAAAATTA
TAATTCATAACAAATCACCTAAAGATAAATTGTACTCTTATAATGAGACT
TGACAAAGATCAAAAAAGTACTATTTTTTTATTGTATAGTTCACATTTCT
ATTAATGTACTGAAGTATATTATTCTCCTATAATTTACAATAAAGTAGCT
TACTTTTATAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGATCTTTCCAAGACTTTTATCA
TGAATGGATGTTGGATCTTGTCCCCTGCTTTTTCCACATCTAAGGAGATG
ATCACGTGGTTTTGTCGTTGAGTTTGTTTATATAATGGATTACGTTGAAG
GTTTTCCTTATATTAAACCATCCCTGCATCCCTGGAATGAAACCTACTTG
GTCAGGATGTATGATTGCTCTAATGTGTTTTTGGATTCAGTTGGAGATAA
TTTTATTGAGGATTTTTGCATCTATATTCATAAGGGAAATTGGACTGAAG
TTCTCTATCTTTGTTGGATATCTCTCGCGGCTTAGGTATCAGAGTAACTT
TGGCTTCATAGAATGAGTTGGGTAGAGTTCCTTCTACTTCTATTTTGTGG
AATAGTTTGTGCAGAACTGAAATTAGATCGTCTTTGAAGGTCTGGTAGAA
CTATGCATTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTAT
TAATGACTGCTTCTATTTCTTTAGGGCGTATAGGACTGCTTAGATCATTA
ACTTGATCCTGACTTAACTTTGGTACCTGGTATCTGTCTATAAATTTGTC
CATTTCATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTANAAGG
ATCTGATGGTCTTTTGCAT

Query= MSMg01no202_g21.b1 MSMg01no202_g21.b1 CHROMAT_FILE:
MSMg01no202_g21.b1 PHD_FILE: MSMg01no202_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:14 2005
         (666 letters)



>mm_chr1_143041455_143042520
          Length = 1066

 Score = 1166 bits (603), Expect = 0.0
 Identities = 648/663 (97%), Gaps = 2/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatattctcccataaatctttccctttgttatgtggtcattcacaatctagg 63
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctatagtctgccataaatctttccctttgttatgtggtcattcacaatctagg 263

                                                                       
Query: 64  atctccttatctcccgcttttctgctcaaggtttcatttttcagcaggttctagttgttt 123
           ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctccttaccttctgcttttctgctcaaggtttcatttttcagcaggttctagttgttt 323

                                                                       
Query: 124 tgaaacacttgcactgttatttcatgtaggattgcttgttaaaagaaactcaaataactg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaaacacttgcactgttatttcatgtaggattgcttgttaaaagaaactcaaataactg 383

                                                                       
Query: 184 aaataaacccttgacctcttccttagcctttcttcaggctagctcctaattagccaccta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaataaacccttgacctcttccttagcctttcttcaggctagctcctaattagccaccta 443

                                                                       
Query: 244 atgtcagctttttatacatgtccccttgttgacttgaccccattgtaacctataatgagt 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 atgtcagctttttatacatgtccccttgttgacttgaccctattgtaacctataatgagt 503

                                                                       
Query: 304 ttgttgctttcacttttaacagattttactggtctattttcagcctatttgtcttatatg 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 ttgttgctttcacttttaacagattttactggtctattttcagcctatttgtcttaaatg 563

                                                                       
Query: 364 acttgaaaaacaaaactaggtgtttgttagtaattatgcagctttgtattggaggattca 423
           |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 564 acttgaaaaacaaaactaggtgttggttagtaattatgcagctttgtattagaggattca 623

                                                                       
Query: 424 aaaagatttcataaacaatgtatggtttagattaaaaggaaacaagtttttattttctct 483
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaagatttcataaacaatatatggtttagattaaaaggaaacaagtttttattttctct 683

                                                                       
Query: 484 atttgaggacttcttaaaattataattcataacaaatcacctaaagataaattgtactct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atttgaggacttcttaaaattataattcataacaaatcacctaaagataaattgtactct 743

                                                                       
Query: 544 tataatgagacttgacaaagatcaaaaaa-gtactatttttttattgtatagttcacatt 602
           ||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||||||
Sbjct: 744 tataatgagacttgacaaagaccaaaaaaagtactatttatt-attgtatagttcacatt 802

                                                                       
Query: 603 tctattaatgtactgaagtatattattctcctataatttacaataaagtagcttactttt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tctattaatgtactgaagtatattattctcctataatttacaataaagtagcttactttt 862

              
Query: 663 ata 665
           |||
Sbjct: 863 ata 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)