CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTACCACTGTGCAATCAGATAATATTTTTCCCTTCAAAATTTT
ACTATTTTTATTATTAGTTTATTATTACTGTGATTTTATGTTAATTTCTT
AATGTTATAGTTTGCTGTTATAGGTGCTTGGTACTGCTTGTAATGTTTTA
TTACAGTATTGATCTTTTAAGGGCTTTATTATGTCAATAGCTATATTTAA
AAAGCAAAAAAAGCCACCCATGCATTGAAGACATCAATATATCAGACTTT
TAATTGACAACTTGCAAAGCCTGCTTGTGATTTATAGCTCGATTACAAAC
TCCTACTTTCTGCTCTGCCAATGCAATTGGCAATATTTTTTTTCAGCCCA
GATGGTGCATTAGCCTTGGCCAGCTGGTTCTCCCCGTGTTGCCTCATCGC
AGAGCCATGCAGCTAATATTGCCACGTATGACCCAGATCAGGAGGTAACA
TGGCAAGGGCTTCAAGCTCAGCTTTGCCCTCAGGACATATGGAAGTGATT
CTGAATGAGATTCATGTATCCAAAATTTGACACTCTCTCCAGTCCCCTAC
AGTCATTTGCTTTCCTGACATGACTAANAACAGTTTACAGAACGCAGAGA
ACTAAACTTTTTATATATGGGGTTTTATAGGTTGGCTGTAATTACTGTCT
CCAGTTCTCATGTTTCAATT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATTTATCCTTTAAGAAAATA
AATTTGTAATAATTGCATTTTCCCTGCTTGTACAAAAGCACACAAGAGGA
TGATTTAATCTAATACACACACACACACATACACACACACACACACACAC
ACACATATATATATAAAATTTGGAATATATAGTTTATCCTATTTTTTGAT
AATTATCTCCATGTAACTAAGACTGAAAGATTAGAGCAACAACATTTAAA
AGTTATTTCAATACCATACAGTAAGCTGTTCTAGCACATCATGTTAGCGA
TACATATATGCACATAAAACCCAACCTCAAAAATACCATTTTTAAAATGT
GTTAAGTAAGCATCTTGATATAAATATTTTTTAAAGTATGCCAGAAATAA
GTTTGTAACAAATTGCTGATATTAACTGAGTTATCCACACGCATCTTCAT
GTATGTTCAAAGAAAGTGGTCTGCTGGTGCACATAATAATATTCCACATT
TGATCAGTGGGTTATGTTTTTGTTCATATGTAAGCCCATGAAGATACACA
TAGAGATGCCTCTGTTGCGTGTATACTGGTACCTATTTTTTCTTGCACAC
TCATTTTAAATATTATTTTTCAGAATACAAAAATACAGTATATAACCACA
TCTGTACAGAGAAATGTACATT

Query= MSMg01no202_j09.b1 MSMg01no202_j09.b1 CHROMAT_FILE:
MSMg01no202_j09.b1 PHD_FILE: MSMg01no202_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:27 2005
         (675 letters)



>mm_chr1_68933031_68934105
          Length = 1075

 Score = 1270 bits (657), Expect = 0.0
 Identities = 668/672 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgctaccactgtgcaatcagataatatttttcccttcaaaattttactatttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ggaattctgctaccactgtgcaatcagataatatttttcccttcaaaattttactatttt 895

                                                                       
Query: 64  tattattagtttattattactgtgattttatgttaatttcttaatgttatagtttgctgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tattattagtttattattactgtgattttatgttaatttcttaatgttatagtttgctgt 835

                                                                       
Query: 124 tataggtgcttggtactgcttgtaatgttttattacagtattgatcttttaagggcttta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tataggtgcttggtactgcttgtaatgttttattacagtattgatcttttaagggcttta 775

                                                                       
Query: 184 ttatgtcaatagctatatttaaaaagcaaaaaaagccacccatgcattgaagacatcaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ttatgtcaatagctatatttaaaaagcaaaaaaagccacccatgcattgaagacatcaat 715

                                                                       
Query: 244 atatcagacttttaattgacaacttgcaaagcctgcttgtgatttatagctcgattacaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 atatcagacttttaattgacaacttgcaaagcctgcttgtgatttatagctcgattacaa 655

                                                                       
Query: 304 actcctactttctgctctgccaatgcaattggcaatattttttttcagcccagatggtgc 363
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 654 actcctactttctgctctgccaatggaattggcaatattttttttcagcccagatggtgc 595

                                                                       
Query: 364 attagccttggccagctggttctccccgtgttgcctcatcgcagagccatgcagctaata 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 594 attagccttggccagctggttctccccatgttgcctcatcgcagagccatgcagctaata 535

                                                                       
Query: 424 ttgccacgtatgacccagatcaggaggtaacatggcaagggcttcaagctcagctttgcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttgccacgtatgacccagatcaggaggtaacatggcaagggcttcaagctcagctttgcc 475

                                                                       
Query: 484 ctcaggacatatggaagtgattctgaatgagattcatgtatccaaaatttgacactctct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctcaggacatatggaagtgattctgaatgagattcatgtatccaaaatttgacactctct 415

                                                                       
Query: 544 ccagtcccctacagtcatttgctttcctgacatgactaanaacagtttacagaacgcaga 603
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 414 ccagtcccctacagtcatttgctttcctgacatgactaaaaacagtttacagaacgcaga 355

                                                                       
Query: 604 gaactaaactttttatatatggggttttataggttggctgtaattactgtctccagttct 663
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 354 gaactaaactttttatatatggggttttaaaggttggctgtaattactgtctccagttct 295

                       
Query: 664 catgtttcaatt 675
           ||||||||||||
Sbjct: 294 catgtttcaatt 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no202_j09.g1 MSMg01no202_j09.g1 CHROMAT_FILE:
MSMg01no202_j09.g1 PHD_FILE: MSMg01no202_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:27 2005
         (606 letters)



>mm_chr1_68787131_68788136
          Length = 1006

 Score = 1156 bits (598), Expect = 0.0
 Identities = 604/606 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaatttatcctttaagaaaataaatttgtaataattgcattttccctgcttgtacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 tttaatttatcctttaagaaaataaatttgtaataattgcattttctgtgcttgtacaaa 260

                                                                       
Query: 61  agcacacaagaggatgatttaatctaatacacacacacacacatacacacacacacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcacacaagaggatgatttaatctaatacacacacacacacatacacacacacacacac 320

                                                                       
Query: 121 acacacacatatatatataaaatttggaatatatagtttatcctattttttgataattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacacacatatatatataaaatttggaatatatagtttatcctattttttgataattat 380

                                                                       
Query: 181 ctccatgtaactaagactgaaagattagagcaacaacatttaaaagttatttcaatacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccatgtaactaagactgaaagattagagcaacaacatttaaaagttatttcaatacca 440

                                                                       
Query: 241 tacagtaagctgttctagcacatcatgttagcgatacatatatgcacataaaacccaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagtaagctgttctagcacatcatgttagcgatacatatatgcacataaaacccaacc 500

                                                                       
Query: 301 tcaaaaataccatttttaaaatgtgttaagtaagcatcttgatataaatattttttaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaaaataccatttttaaaatgtgttaagtaagcatcttgatataaatattttttaaag 560

                                                                       
Query: 361 tatgccagaaataagtttgtaacaaattgctgatattaactgagttatccacacgcatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgccagaaataagtttgtaacaaattgctgatattaactgagttatccacacgcatct 620

                                                                       
Query: 421 tcatgtatgttcaaagaaagtggtctgctggtgcacataataatattccacatttgatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatgtatgttcaaagaaagtggtctgctggtgcacataataatattccacatttgatca 680

                                                                       
Query: 481 gtgggttatgtttttgttcatatgtaagcccatgaagatacacatagagatgcctctgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgggttatgtttttgttcatatgtaagcccatgaagatacacatagagatgcctctgtt 740

                                                                       
Query: 541 gcgtgtatactggtacctattttttcttgcacactcattttaaatattatttttcagaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcgtgtatactggtacctattttttcttgcacactcattttaaatattatttttcagaat 800

                 
Query: 601 acaaaa 606
           ||||||
Sbjct: 801 acaaaa 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)