BAC Information

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BAC

Clone NameMSMg01-202J10
Chromosome1 (Build37)
Map Location 68,787,331 - 68,787,928
singlet/doubletsinglet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202J10.T7 (MSMg01no202_j10.b1)MSMg01-202J10.TJ (MSMg01no202_j10.g1)
ACCAG387683AG387684
length723728
length of high quality
(start - end)
---598 (77 - 674)
definitionCHROMAT_FILE: MSMg01no202_j10.b1 PHD_FILE: MSMg01no202_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:27 2005CHROMAT_FILE: MSMg01no202_j10.g1 PHD_FILE: MSMg01no202_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTACCACTGTGCAATCACATCCTATTTTTCCCTTCAAAATTTT
ACTATATTTATTATTAGTTCCCTATTACTGAGATTTTATGTTAATTTCTT
AATGATATAGCTTGCTGTTATACTTGCTTGCTACTGCTTGTAATGTTTTA
TTACAGCATTGATCTTTTACGGTCTTTATTATGTCCATAACTATATTTAA
AAAGCCAAAAAAGCCACCCATGCATTGAAGACATCTGTATATCATACTTT
TAATTGACAACTTGCAAAGACTGCTTGTCATTTACAGCTCGATTACAAAC
TCCTACTTTCTGCTCTGCCCCCCCCTTGCCAATATTTTTTTTCATCCCAG
ATGGTGCATTAGCCTAGACCAGATGATTCTCCCCGTGTTGCCTCATCGCA
GAGCCATGACACTAATATTGCCACGTATGAGCCAGATCCTCATGGAACAT
GTGTAAGGGCTTCTAGCTCAGCTTTGCCCTCATGACATATCTAAGTCATT
CTGAATGACATTCATGTATCCGAAATTTGACACTCTCTCTCACCCCCTAC
AGTCCTTTGCTTTCCTGACATGACTAACAGCCGTTTACAGAACGCAAACC
ACTAATCTTTTTATATATGGCGTTTTAAAGCTCGCCTATAATTACTGTCT
CCAGTTCTCATGCTTCAAATCAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATTTATCCTTTAAGAAAATA
AATTTGTAATAATTGCATTTTCCGTGCTTGTACAAAAGCACACAAGAGGA
TGATTTAATCTAATACACACACACACACATACACACACACACACACACAC
ACACATATATATATAAAATTTGGAATATATAGTTTATCCTATTTTTTGAT
AATTATCTCCATGTAACTAAGACTGAAAGATTAGAGCAACAACATTTAAA
AGTTATTTCAATACCATACAGTAAGCTGTTCTAGCACATCATGTTAGCGA
TACATATATGCACATAAAACCCAACCTCAAAAATACCATTTTTAAAATGT
GTTAAGTAAGCATCTTGACATAAATATTTTTTAAAGTATGCCAGAAATAA
GTTTGTAACAAATTGCTGATATTAACTGAGTTATCCACACGCATCTTCAT
GTATGTTCAAAGAAAGTGGTCTGCTGGTGCACATAATAATATTCCACATT
TGATCAGTGGGTTATGTTTTTGTTCATATGTAAGCCCATGAAGATACACA
TAGAGATGCCTCTGTTGCGTGTATACTGGTACCTATTTTTTCTTGCACAC
TCATTTTANATATTATTTTTCAGAATACAAAAATACAGTATATAAACACA
TCTGTACAGAGAAATGTACATTTAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_j10.g1 MSMg01no202_j10.g1 CHROMAT_FILE:
MSMg01no202_j10.g1 PHD_FILE: MSMg01no202_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:27 2005
         (598 letters)



>mm_chr1_68787131_68788128
          Length = 998

 Score = 1135 bits (587), Expect = 0.0
 Identities = 595/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaatttatcctttaagaaaataaatttgtaataattgcattttccgtgcttgtacaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tttaatttatcctttaagaaaataaatttgtaataattgcattttctgtgcttgtacaaa 260

                                                                       
Query: 61  agcacacaagaggatgatttaatctaatacacacacacacacatacacacacacacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcacacaagaggatgatttaatctaatacacacacacacacatacacacacacacacac 320

                                                                       
Query: 121 acacacacatatatatataaaatttggaatatatagtttatcctattttttgataattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacacacatatatatataaaatttggaatatatagtttatcctattttttgataattat 380

                                                                       
Query: 181 ctccatgtaactaagactgaaagattagagcaacaacatttaaaagttatttcaatacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccatgtaactaagactgaaagattagagcaacaacatttaaaagttatttcaatacca 440

                                                                       
Query: 241 tacagtaagctgttctagcacatcatgttagcgatacatatatgcacataaaacccaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagtaagctgttctagcacatcatgttagcgatacatatatgcacataaaacccaacc 500

                                                                       
Query: 301 tcaaaaataccatttttaaaatgtgttaagtaagcatcttgacataaatattttttaaag 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tcaaaaataccatttttaaaatgtgttaagtaagcatcttgatataaatattttttaaag 560

                                                                       
Query: 361 tatgccagaaataagtttgtaacaaattgctgatattaactgagttatccacacgcatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgccagaaataagtttgtaacaaattgctgatattaactgagttatccacacgcatct 620

                                                                       
Query: 421 tcatgtatgttcaaagaaagtggtctgctggtgcacataataatattccacatttgatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatgtatgttcaaagaaagtggtctgctggtgcacataataatattccacatttgatca 680

                                                                       
Query: 481 gtgggttatgtttttgttcatatgtaagcccatgaagatacacatagagatgcctctgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgggttatgtttttgttcatatgtaagcccatgaagatacacatagagatgcctctgtt 740

                                                                     
Query: 541 gcgtgtatactggtacctattttttcttgcacactcattttanatattatttttcaga 598
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 gcgtgtatactggtacctattttttcttgcacactcattttaaatattatttttcaga 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)