BAC Information

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BAC

Clone NameMSMg01-202J13
Chromosome1 (Build37)
Map Location 195,407,522 - 195,407,828
singlet/doubletsinglet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202J13.T7 (MSMg01no202_j13.b1)MSMg01-202J13.TJ (MSMg01no202_j13.g1)
ACCAG387689AG387690
length724766
length of high quality
(start - end)		312 (46 - 357)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no202_j13.b1 PHD_FILE: MSMg01no202_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:27 2005CHROMAT_FILE: MSMg01no202_j13.g1 PHD_FILE: MSMg01no202_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTCAAAGGACACTTTTGCCTTTTATCACACTTTCTCTCCAGTT
ACCACTAAAGAAGGCTTGCACCTTCTCTCATGGCAAGAGAATGGTCTGTG
GATCAAATGTGCTTGTTCTGGAACAACAAAGCAGATAGCCTGGGCCTGGA
GGAGGTACTGTAGCTCTCAGAAATCTTCATCAGTTGTCACTCTGTGGGGC
CTGTGCATGAGGATATGAATGTTGGTTAGGGGGAGCAGGGCAGAGGAGGC
CTCCGTGCTCAGGGTACATTGGCTCTAGGCTGGGCAGGTCTTTAAATTCT
GCTCACTATATACTAGCTCTGCGACCTGAGAGACAATTATGAACTCTCTG
AGGTGTGTGTGTTTTGTGTGTGTGTGAGTATGTGTTTTTTCTGTGGTGTG
TGTGTNTTTTNNTNNNTTTTNTTTTTTTTTTTTTTTTTTTCTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTGTTTTTATTTTNTTTTTT
TTTTCCTATTTTTTTTTNATTTNNNNTTTTTTANTATTTCCTCTTATTTT
TNTTCATTAACAATTTTTTCTCTATTTTTTCCCATATATTATTTTATTTT
TTTTTCCACATCACCCTTTTTCCCCCATTATTTTCCATTTATTTTTACTA
TTTTTCTCACTCTTATTTTTATGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCCAATACTTTTAACATG
AAGGGGTGTTGTATTTTGTCAAATGCTTTTTCTGCATCTAAGGAGATGAT
CATGTGATTTTTTTTCTTTTAGTTTGTTTATATAGTGGATTATGTTAATG
GGTTTTCATATATTAAACCAACCTTGCATCCCTGGGATGAAGCCTACTTG
ATCGTGGTGAATGATGGTTTTGATGTGTTCTTGGATTCGGTTTGCAAGAC
TTTTATTGAGTATTTTTGCATCGATATTCATAAGCAAGATTGATCTGAAG
TTCTCTTTTTTTATTCGCCCCCCCCTGCGGTTTAGGTATCAGAAAAATTG
TGGTTTCATACAATGAGTTAAGTAATAGTGTTCCTTCTGTTTCTATTTTA
TGGAATAGTTTGAGTAAAATTGTTGCCTGTTCTTCCTTGTATACCCGCCG
TTATCTGTATTAAATCCTCTCAGTTTACCTCATGTATTTGGTATTTGGTG
GTATTCCTTCCCCCCCAGTAATGACCCCCAACACCCGTTAACTTTAACAC
CTCTCTTTTTCCTCCTATTTGTGGTCCCGTCTTTAGTCGACATCCTTATC
CCCTTTCTGCCTTGAATATATTTTAACATAGATAAATTTTTTTCTCGTTA
ACATAAAAACATTTTAATTCCAACTTAGTTTAATTATATAGGCTTTTGAT
TCGTATAATGTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_j13.b1 MSMg01no202_j13.b1 CHROMAT_FILE:
MSMg01no202_j13.b1 PHD_FILE: MSMg01no202_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:27 2005
         (312 letters)



>mm_chr1_195407319_195408030
          Length = 712

 Score =  571 bits (295), Expect = e-167
 Identities = 304/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcttcaaaggacacttttgccttttatcacactttctctccagttaccactaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttcaaaggacacttttgccttttatcacactttctctccagttaccactaa 263

                                                                       
Query: 64  agaaggcttgcaccttctctcatggcaagagaatggtctgtggatcaaatgtgcttgttc 123
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaaggcttgcacatcctctcatggcaagagaatggtctgtggatcaaatgtgcttgttc 323

                                                                       
Query: 124 tggaacaacaaagcagatagcctgggcctggaggaggtactgtagctctcagaaatcttc 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 tggaacaacaaagcagatagcctgggcttggaggaggtactgtagctctcagaaatcttc 383

                                                                       
Query: 184 atcagttgtcactctgtggggcctgtgcatgaggatatgaatgttggttagggggagcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcagttgtcactctgtggggcctgtgcatgaggatatgaatgttggttagggggagcag 443

                                                                       
Query: 244 ggcagaggaggcctccgtgctcagggtacattggctctaggctgggcaggtctttaaatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcagaggaggcctccgtgctcagggtacattggctctaggctgggcaggtctttaaatt 503

                  
Query: 304 ctgctca 310
           |||||||
Sbjct: 504 ctgctca 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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