Query= MSMg01no202_j15.b1 MSMg01no202_j15.b1 CHROMAT_FILE:
MSMg01no202_j15.b1 PHD_FILE: MSMg01no202_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:28 2005
(345 letters)
>mm_chr1_53447075_53447821
Length = 747
Score = 582 bits (301), Expect = e-170
Identities = 335/347 (96%), Gaps = 2/347 (0%)
Strand = Plus / Plus
Query: 1 taaaagcaggcatgaccgtaaagcaagcaattgtgtacaatctgctctcggccatgatgg 60
||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 201 taaaagcaggcatgaccttaaagcaagcaatggtgtacaatctgctctctgccatgatgg 260
Query: 61 cttacataggaatgctcataggcacggcagtcggtcagtatgccaacaacatcacactct 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttacacaggaatgctcataggcacggcagtcggtcagtatgccaacaacatcacactct 320
Query: 121 ggatcttcgcaatcactgccggcatgttcctctatgtggccttggtggatatggtaagat 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatcttcgcaatcactgcaggcatgttcctctatgtggccttggtggatatggtaagat 380
Query: 181 gctttagatgacttctctgttgtactgaacttgcaaatagaatacagccttcaaaaatgg 240
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttagataacttctctgttgtattgaacttgcaaatagaatacagccttcaaaaatgg 440
Query: 241 aagacat--ttggaagtggttggaaactgcagtgtatttttaaggaatatggccaatttt 298
||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 441 aagacatatttggaagtggttgggaattgcagtgtatttttaaggaatatggccaatttt 500
Query: 299 aaagactgacatctaaataacaattagaaaaaccatttaccttagaa 345
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 aaagactgacatctaaataataattagaaaaaccatttaccttagaa 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 747
Length adjustment: 9
Effective length of query: 336
Effective length of database: 738
Effective search space: 247968
Effective search space used: 247968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no202_j15.g1 MSMg01no202_j15.g1 CHROMAT_FILE:
MSMg01no202_j15.g1 PHD_FILE: MSMg01no202_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:28 2005
(643 letters)
>mm_chr1_53470339_53471381
Length = 1043
Score = 903 bits (467), Expect = 0.0
Identities = 606/672 (90%), Gaps = 33/672 (4%)
Strand = Plus / Minus
Query: 4 ctaaaaacttcaagttagtccaatttatttatttatttatttttccca-aaatgacagac 62
||||||||||||||||||| |||||||||||||||||||||| | || |||||||| |
Sbjct: 1009 ctaaaaacttcaagttagttcaatttatttatttatttatttatagcagaaatgacaaat 950
Query: 63 aaaatatccaaattcaagaccaaacaaataaataaatattaatttgaaaatt-aacttta 121
||||| || |||||||||| |||| |||||||||||| |||||||||||||| |||||||
Sbjct: 949 aaaatgtctaaattcaagatcaaataaataaataaatgttaatttgaaaattaaacttta 890
Query: 122 ttggtaacaaaaaaatg------------------------------gactgattctttc 151
|||||||| |||||||| ||||||||||||
Sbjct: 889 ttggtaac-aaaaaatgttatctctctctctctctctctctctctctgactgattctttt 831
Query: 152 caattcttgttaagttttctaaggcaagaatttgaagagcctctgggcttcagcatccac 211
|| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 830 cagttcttgttaagtttactaaggcaagaatttgaagaggctctgggcttcagcatccac 771
Query: 212 acaagggggtattcaaagcataaaaagggcaactggactcaggttgaatttcagactgct 271
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 770 acaaggggttattcaaagcataacaagggcaactggactcaggttgaatttcagactgct 711
Query: 272 ttgagtttctagagtacttcatgatatgctttctagttttatatctgtcactgtgacttt 331
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 710 ttgagttcctagagtacttcatgatatgctttctaattttatatctgtcactgtggcttt 651
Query: 332 aagaagctaggctagaagacctacaccaacttgcctttaatgggcaggtaagttgaatga 391
|||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct: 650 aagaagctaggctagaagacctacactaacttgactttaataagcaggtaagttgaatga 591
Query: 392 gaagtagactgtgatccagtagcttctaagtagccatgtattggttaagattttccacta 451
||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||
Sbjct: 590 aaagtagactgtgatccagtagctactaaatagcaatgtattggttaagattttccacta 531
Query: 452 aaatttggctagagaaaccattactatttttctaaggaagatttgaaaagctctatgtct 511
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 530 aaatttggctagagaaaccattactatttttctaaggaaggtttgaaaagctctatgcct 471
Query: 512 tcctcacaaattcaaacaaaccttccttttgttaacaaagacaatgttcaccgtctctca 571
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 470 tcctcacaaattcaaacaaaccttccttttgttaacaaagacaatgtttaccgtctctca 411
Query: 572 tgttttctgttgtgttccagggacttgttgtgatgtctacagagctgnaggaagtggtga 631
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 410 tgttttctgttgtgttccagggacttgtcgtgatgtctacagagctggaggaagtggtga 351
Query: 632 gcagcatcctga 643
||||||||||||
Sbjct: 350 gcagcatcctga 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
