BAC Information

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BAC

Clone NameMSMg01-202M08
Chromosome1 (Build37)
Map Location 144,588,932 - 144,589,214
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369, Cdc73, B3galt2, LOC623138, Glrx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202M08.T7 (MSMg01no202_m08.b1)MSMg01-202M08.TJ (MSMg01no202_m08.g1)
ACCAG387795AG387796
length977729
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no202_m08.b1 PHD_FILE: MSMg01no202_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:42 2005CHROMAT_FILE: MSMg01no202_m08.g1 PHD_FILE: MSMg01no202_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGTGGGGGATATCGATTTTAAAAAAAAAAATAAAGTTAAAAAAANNNN
NAACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTAGTTATGAGACGCATTTTTTAATGGGGTTGTTTG
ATTAAATGAAGAAAAATTTTTTGCCCGAAATATAAAAGATAGAGAATAAA
AAAATGGAGGAAGAGGAAGGAGAGGAGAAGAATTTTATTTTATTTTGAAG
TTATTGTAGTTTTGGTTTTTGTGGGGGTGGATGTAAGAAAAAGATAAAAA
AAATAAAAATATTTAATTTTAATTTAATGGATATGAAGGATATAAAAAGA
GTGTTGAAAAAGGAGAAGGATGTAAATAAAAAAAAGAGAGATATTTTATT
ATATGTTAAGAAAGAGAAATGATAAAATAAAAAAGGGAGAAAAAGATATG
GGTGAATTAACACACCCCCCCCCCCAAAAGTAGAGAAAATTTAGGATAAA
AGTATGATTTTTTGTTTGTTTCCCCACCCCCCTTTAAAAAAAAAAAATAA
AGAATATGTTGGTGTGGTGTGGGAAAATTGATTTTTTATAAAAAACAATT
GATTAAATAAAAGTGAATAATTAGGTATAGAGAGAGTAGGGAAATGTGAT
TAATATTATATAAATATAAAGGAAGAGTATGAGGGTTATAAGAGTGAAAT
AAAAAAGAAGTAAGAAGTTATAAAAATAATAAGGGATGAATTAGGAGTAA
AAATAAAATAAGAGATAAATATTAAATAAAAATAATGGGAGATATTAGAA
AATTTTTTTTTAGAAATATATGTATTAGAAAATAACGAAAAAAAAAAAAG
AAAATGGGGAAAAATGAAAAAATAGAGTAAAGATTTTGATGAGATTAAAA
TGTTATAGAATAAATTTGGGCAAACAAGAGTGTATAGATAAGAAATATTT
GAGGAAAGAAAGAATTTAGTTTAAAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATTTCGTACAGATAAAGGGCG
AATGTCTGGTAATGCTTGGACCGCAGTAATATAGAAGAAATAACCCTGCT
ATGTCATTCATTCTGCCCATGCTGTCTTTAAAATCTACATCTCTTTCTTG
TAAAATTTAAAATACAAGGAATTTTGTTCCTTTGAAGCTGGAACACCCAG
TTTTAATCTTGTGGTTGTGATCAAACTTTCTACTTATCCGGTATGCCCTT
AGTAGTTTTACTTTTTCACCAAATGGAAAAAGAGATCTGACCTAGCTTTA
ATAAAAATTATATCTAAATCTGCCACCCATAAAGTACAGGAAAAATTATA
TCTAGGTTTAGTTACCCCCCACATGAAGATAATATCTAATGAATCTGCCT
TAAATTCTTCTTCATGTAACAGGAACCTGACTTCCTGTCAAACTATGAAA
AAGAGTCAAATGTCCTTTTCCAAGATATTTCTTTAGAGTTAGGTCTTGCA
AGGAAGCCAGCTACTGTAAAATTGCCCATATACACTCAGGATGCATAAGC
TGTCTGCTAATGATTCTGTATCTTGCACACTATCCTGTCTTTTGAATATA
CCCTATTTCCCCCCTTTTTTCACCAATCTATCCAATCTTATTTTCCACCA
CACTCCTTACATAATTTGTTTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_m08.g1 MSMg01no202_m08.g1 CHROMAT_FILE:
MSMg01no202_m08.g1 PHD_FILE: MSMg01no202_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:42 2005
         (287 letters)



>mm_chr1_144588732_144589417
          Length = 686

 Score =  487 bits (252), Expect = e-142
 Identities = 276/284 (97%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatttcgtacagataaagggcgaatgtctggtaatgcttggaccgcagtaatatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||
Sbjct: 483 catatttcgtacagataaagggcgaatgtctggtaatgcttggaatg-agtaatatagaa 425

                                                                       
Query: 61  gaaataaccctgctatgtcattcattctgcccatgctgtctttaaaatctacatctcttt 120
           |||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 424 gaaataactctgctatgccattcatactgcccatgctgtctttaaaatcgacatctcttt 365

                                                                       
Query: 121 cttgtaaaatttaaaatacaaggaattttgttcctttgaagctggaacacccagttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 364 cttgtaaaatttaaaatacaaggaattttgttcctttgaagctgggacacccagttttaa 305

                                                                       
Query: 181 tcttgtggttgtgatcaaactttctacttatccggtatgcccttagtagttttacttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcttgtggttgtgatcaaactttctacttatccggtatgcccttagtagttttacttttt 245

                                                       
Query: 241 caccaaatggaaaaagagatctgacctagctttaataaaaatta 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caccaaatggaaaaagagatctgacctagctttaataaaaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)