BAC Information

Click to search

BAC

Clone NameMSMg01-202M09
Chromosome1 (Build37)
Map Location 144,588,932 - 144,589,214
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369, Cdc73, B3galt2, LOC623138, Glrx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202M09.T7 (MSMg01no202_m09.b1)MSMg01-202M09.TJ (MSMg01no202_m09.g1)
ACCAG387797AG387798
length732712
length of high quality
(start - end)
311 (46 - 356)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no202_m09.b1 PHD_FILE: MSMg01no202_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:43 2005CHROMAT_FILE: MSMg01no202_m09.g1 PHD_FILE: MSMg01no202_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTCGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTT
TCTGAAGTCCACCTTCTTGCGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTC
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTA
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGATTTTCCCCACT
TTCTCCTCTATAACTTCACGCCCCTCTGGTTTTATGTGAAGTTCTTTGAT
CCATTTATATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACTTGATACCCACCATTTGTGTCATCGCCAATTGTTGATAATG
CTGTCTTTCTTCCCCTGGCAGTTTTTAGCTCCCTTTGTTCTAATATCTCG
TGATCTCTACGAGCGTGTGCATCAATTTTTGTTTTTACCTATTCCATTAC
ATCTGAGACTACCTTGTCTGATCTCCTCCTCCTTTTTTTATATTTAATTC
TTTTCTTCAATTTCGCTCTTGTCCCAACATTTTTTTTTCCTCTTCCCCAC
TCCTCTATTTTCTTTCTCCAGGCTTTCCTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATTTCGTACAGATAAAGGGCG
AATGTCTGGTAATGCTTGGACCGAGTAATATAGAAGAAATAACCCTGCTA
TGTCATTCATTCTGCCCATGCTGTCTTTAAAATCTACATCTCTTTCTTGT
AAAATTTAAAATACAAGGAATTTTGTTCCTTTGAAGCTGGAACACCCAGT
TTTAATCTTGTGGTTGTGATCAAACTTTCTACTTATCCGGTATGCCCTTA
GTAGTTTTACTTTTTCACCAAATGGAAAAAGAGATCTGACCTAGCTTTAA
TAAAAATTATATCTAAACCCCCCACCCATAAAGTACAGGAAAAATTATAT
CTAGGTTTAGTTAGCTGGAGATGAAAATAATATCTAATGAATCTGCCTTA
AATTCTTCTTCATGTAACAGGAACCTGAGTTCCTGTCAAACTATGAAAAA
GAGTCAAATGTTCTTTTCCAAGATATTTCTTTAGAGTTAGGTCTTGGAAG
GAAGCCAGCTATGGAAAAATTGCCCATATACACTCAGGATGGACAAGGTG
TCTGCAAATGAAACTGAAACTTGTAGACTATCATGTAGGTGAATTAAAGC
TATACATAATCTTCTATATGAGCCTATCTAAACTGAAATAATACAACATC
AAGAAGATCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_m09.g1 MSMg01no202_m09.g1 CHROMAT_FILE:
MSMg01no202_m09.g1 PHD_FILE: MSMg01no202_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:43 2005
         (283 letters)



>mm_chr1_144588732_144589414
          Length = 683

 Score =  493 bits (255), Expect = e-144
 Identities = 276/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatttcgtacagataaagggcgaatgtctggtaatgcttggaccgagtaatatagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 483 catatttcgtacagataaagggcgaatgtctggtaatgcttggaatgagtaatatagaag 424

                                                                       
Query: 61  aaataaccctgctatgtcattcattctgcccatgctgtctttaaaatctacatctctttc 120
           ||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 423 aaataactctgctatgccattcatactgcccatgctgtctttaaaatcgacatctctttc 364

                                                                       
Query: 121 ttgtaaaatttaaaatacaaggaattttgttcctttgaagctggaacacccagttttaat 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 363 ttgtaaaatttaaaatacaaggaattttgttcctttgaagctgggacacccagttttaat 304

                                                                       
Query: 181 cttgtggttgtgatcaaactttctacttatccggtatgcccttagtagttttactttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cttgtggttgtgatcaaactttctacttatccggtatgcccttagtagttttactttttc 244

                                                      
Query: 241 accaaatggaaaaagagatctgacctagctttaataaaaatta 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 accaaatggaaaaagagatctgacctagctttaataaaaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)