CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGTTATCCCAAGCTAGACTTTGTTCCATTTGTTGTTTGTAGGTT
CCCTTTCAAGGGTGAGTGCAGGCATGTCTTCTTTTCAAACAAAGTCTCTC
ATGTACCAGGGCATCCATACTCAAAAGATTACTATTGAGGCAATTCTTGA
AAGATGCTATTCTGATTCCTATTTTGATATAAGATGCTTTCTTTCTGACA
CTCTCTGACATTCACTACAGGGGCATTACCGCAGACTGTATTTTGGTATT
TGTACTTTCAGTTTCTATAAGCATGGGGTGAAAAAAAAGTTTTTGTTTCA
TAAAGTTAGGCTTATCTCATCTATTTTACAGCAGCCATGAAACCCACACA
TTCTACTTGTCTCATAATTTGTTTTCTGTTCTTTTGATTTTTTAGTCATA
TCCTTCTCTTATAGCATTTTATATACCATTTAGTACCTACAATGATTTAC
CAATATACATATTTCTTTCTGGTTGATTTACTTGTTCATGAATAGTGCTG
ACTTTTGCCTACAGTCTTGGCTTAACTATTAAAGGTATTCACATTTATTC
TTAGCCATGATTTCATTTCTGTGGTAGTGTTATGGATACTGTATTAATAA
CTTTTATTATTGCTATGACCAAGAACATAACTACTTCAGGAAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATTTAGTTCTGTTCTCAACTT
TTTAATAGAGTTATTTGGTTCCCTGGAGTCTACCTTCTTGAGTTCTTTAT
ATATTTTGGATATTAGCCCTCTATTGGCTGTAGGGTTGATAAATATCTAT
TCCAAATTTGTGGTTTACCATTTTGTCCTATTAATAGTGTTATTTGCTTT
ACAAAGCTTTTAAATTTTTGAGGCCCCATTTGTCAATTGTTGATCTTAGA
GCATAAGCCATTAATGTTCTATTCAGCATATTTTCCCCTGTACCTGCATG
TGTGAGTTTTTTCTCCACTTTCTCTTCTAATAGATTGAGTGTATCTGGTT
TTAAGTGGATGTCCTAGATCCACTTGGGATTGAGGTTTATTCAGGGAAAT
GAGAATGAATAAATTTTCATTCTTCTATATGTTGACTGCCAGTTGAACCA
GCACCATTTGTTGAAAATGCTATATTTTTTCCACTGGATGATTTTAGCTC
CTTTGCTAAAGAGCAAGTGACCAGAGGTGTGTGAGTTCATTTCTGGGTCT
TCAATTCCACTCCATTGACCTGTTTCTTTACCAATATCATGAAGCTTATA
TCACCATGGCTCTATAGTACAGCTTGAGGTCAGTGATGGTAATTCCCCAG
AA

Query= MSMg01no202_m13.b1 MSMg01no202_m13.b1 CHROMAT_FILE:
MSMg01no202_m13.b1 PHD_FILE: MSMg01no202_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:43 2005
         (649 letters)



>mm_chr1_114945424_114946471
          Length = 1048

 Score = 1093 bits (565), Expect = 0.0
 Identities = 625/645 (96%), Gaps = 3/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcattgttatc-ccaagctagactttgttccatttgttgtttgtaggttccctttca 64
           |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aattcattg-gatcaccaagctagactttgttccatttgttgtttgtaggttccctttca 790

                                                                       
Query: 65  agggtgagtgcaggcatgtcttcttttcaaacaaagtctctcatgtaccagggcatccat 124
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aggttgagtggaggcatgtcttcttttcaaacaaagtctctcatgtaccagggcatccat 730

                                                                       
Query: 125 actcaaaagattactattgaggcaattcttgaaagatgctattctgattcctattttgat 184
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 729 actcaaaagattactattgaggcaattcttgaaagaggctattctgattcttattttgat 670

                                                                       
Query: 185 ataagatgctttctttctgacactctctgacattcactacaggggcattaccgcagactg 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 669 ataagatgctttctttctgacactctctgacattcactacaggggcattaccacagactg 610

                                                                       
Query: 245 tattttggtatttgtactttcagtttctataagcatggggtgaaaaaaaagtttttgttt 304
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 609 tattttggtatttgtactttcagtttcaataagcatggggtg-aaaaaaagtttttgttt 551

                                                                       
Query: 305 cataaagttaggcttatctcatctattttacagcagccatgaaacccacacattctactt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 550 cataaagttaggcttatctcatctattttacagcagccatgaaacccacacattctacat 491

                                                                       
Query: 365 gtctcataatttgttttctgttcttttgattttttagtcatatccttctcttatagcatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||
Sbjct: 490 gtctcataatttgttttctgttcttttgattttttagtcatatcctgatcgtatagcatt 431

                                                                       
Query: 425 ttatataccatttagtacctacaatgatttaccaatatacatatttctttctggttgatt 484
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 430 ttatatatcatttagtacctacaatgatttaccaatatacatttttctttctggttgatt 371

                                                                       
Query: 485 tacttgttcatgaatagtgctgacttttgcctacagtcttggcttaactattaaaggtat 544
           | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 370 tgcttgttcatgaatagtgctgacttttgcctacagtcttggcttaattattaaagttat 311

                                                                       
Query: 545 tcacatttattcttagccatgatttcatttctgtggtagtgttatggatactgtattaat 604
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 310 tcacatttattcttagccatgatttcgtttctgtggtagtgttatggatactgtattaat 251

                                                        
Query: 605 aacttttattattgctatgaccaagaacataactacttcaggaac 649
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aacttttattattgctatgaccaagaacataactacttcaggaac 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1048
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1038
Effective search space:   663282
Effective search space used:   663282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)