CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAACATAGACTCTATAAATTTATTATGTACATGAAATTGTAAATGC
CAGTCATGCAGAAAGCTAATATATATGAGAAACAATTATTCTTCTATTTT
CCATGGAAATAAAAAAGCACCAAGAAATACAATCAATAAAAATTTAATGA
ATATCTATTTGGAAAGATCACTTTAGAAGTTATTGGAAGGAAACAATAAA
TAATAGAACCATTGCCAAAACAAGAGTTTTTAATCATACATATATACACA
ACAATGATAAATTATTCATTCATGAAATACTTACAGAATACATAAGAGGT
ACTAGAAATTAAGATGAACACTGAACAGCATCAGCAACAATGGTAAAATT
ACTAGTGATCTCAGAATTTTCCATGTATACAGATGTACTGGTACTGTGTC
AGGCATTCTCTATTGAATATCTTGATTCTTATGTTAAAAGAACAAAACAA
AACAAAGCAGATAAGCTAGCAAATGTAAATCACTGACACAAAAGTTAAGA
TATTTGGATTATAATGGAGTCTTATCTGTTTGTCTCAAAGGAGATGGTGA
TACATATTCTTAATTGGAATGTGAGTGTCATTGTGTGCTCCCAAACATGA
AGATGGGCAAGAGAAGAGAATAAGAAGAACAAAGGGCCATTGGACCAGGG
AGGCTTAGGCATCCTTTGTACAGAAAGAA

ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAAAGTGGGTGGGACAGAGA
GAAACTACAGCATCTAGAATACATAGAGGGCATAGCTAGGAAGTGTGTTC
ATTAGAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAAGAGGAGGGGAGAGGA
AAGAAAGAAAAAAAGGGAAGAAAAGGAGGAAGTAAAGAAGGGAGAGGGAA
AAAGGAGGGAAGAAAGAGAAAGGAGGTTTTTTTTGTAGAGATAGGAGGGA
GGGAGGAGGGGGTTTTTTAATCTCCCTAAAACAAAACCCGGGGTTGGTTT
TTTGTGTGGGGGTTTGGTTTTCCCCCCCCAAAAAAAAAAAAAAAAAGGGG
GGGGGGGGGGGGGGGCTCCTTTTTTTTAACCCGTTCCCTTGTGTTTTAGT
TTATACATCGCCCGACTCTGATCATAAACACTATGTTCTCTGCTCCACTT
CAGACTTCTTCTGTCTCGCGCTTTTCTTTTTAATCCGCACGCAGACACAC
GATTAAGTAGTAGGCATATCTTAATTTCCTCATTCTTACTCGATTAACAC
TCATTACTTTCCCCAACCGTATACAGCCGGTATATCTCCCCGCATTTCTA
ACGATAGAATTCACGTATGCATAATTATGCTGACTAGGGCCTTGATAAAT
CACCGCTTGTCCCA

Query= MSMg01no203_d22.b1 MSMg01no203_d22.b1 CHROMAT_FILE:
MSMg01no203_d22.b1 PHD_FILE: MSMg01no203_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:20 2005
         (685 letters)



>mm_chr1_109560558_109561639
          Length = 1082

 Score = 1255 bits (649), Expect = 0.0
 Identities = 672/681 (98%), Gaps = 3/681 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaacatagactctataaatttattatgtacatgaaattgtaaatgccagtcatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaacatagactctataaatttattatgtacatgaaattgtaaatgccagtcatg 264

                                                                       
Query: 65  cagaaagctaatatatatgagaaacaattattcttctattttccatggaaataaaaaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagaaagctaatatatatgagaaacaattattcttctattttccatggaaataaaaaagc 324

                                                                       
Query: 125 accaagaaatacaatcaataaaaatttaatgaatatctatttggaaagatcactttagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accaagaaatacaatcaataaaaatttaatgaatatctatttggaaagatcactttagaa 384

                                                                       
Query: 185 gttattggaaggaaacaataaataatagaaccattgccaaaacaagagtttttaatcata 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttattgggaggaaacaataaataatagaaccattgccaaaacaagagtttttaatcata 444

                                                                       
Query: 245 catatatacacaacaatgataaattattcattcatgaaatacttacagaatacataagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catatatacacaacaatgataaattattcattcatgaaatacttacagaatacataagag 504

                                                                       
Query: 305 gtactagaaattaagatgaacactgaacagcatcagcaacaatggtaaaattactagtga 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 gtactagaaattaagatgaacactgaagagcatcagcaacaatggtaaaattactagtga 564

                                                                       
Query: 365 tctcagaattttccatgtatacagatgtactggtactgtgtcaggcattctctattgaat 424
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 tctcagaattttccatgtatacagatgtactggtactatgtcaggcattctctattgaat 624

                                                                       
Query: 425 atcttgattcttatgttaaaagaacaaaacaaaacaaagcagataagctagcaaatgtaa 484
           ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 625 atctttattcttatgttaaaagaacaaaacaaaacaaagcagattagctagcaaatgtaa 684

                                                                       
Query: 485 atcactgacacaaaagttaagatatttggattataatggagtcttatctgtttgtctcaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atcactgacacaaaagttaagatatttggattataatggagtcttatctgtttgtctcaa 744

                                                                       
Query: 545 aggagatggtgatacatattcttaattggaatgtgagtgtcattgtgtgctcccaaacat 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 745 aggagatggtgatacatattcttaattggaatgtgagtgtcattgtgtgctcacaaacat 804

                                                                       
Query: 605 gaagatgggcaagagaagagaataagaagaacaaagggccattggaccagggaggcttag 664
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 805 gaagatgggcaagagaagagaataagaa---caaagggccattggaccagggaggcttag 861

                                
Query: 665 gcatcctttgtacagaaagaa 685
           |||||||||||||||||||||
Sbjct: 862 gcatcctttgtacagaaagaa 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1082
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1072
Effective search space:   723600
Effective search space used:   723600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)