BAC Information

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BAC

Clone NameMSMg01-203E11
Chromosome1 (Build37)
Map Location 68,477,041 - 68,477,327
singlet/doubletsinglet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842, EG241084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203E11.T7 (MSMg01no203_e11.b1)MSMg01-203E11.TJ (MSMg01no203_e11.g1)
ACCAG388111AG388112
length724790
length of high quality
(start - end)
289 (126 - 414)79 (141 - 219)
definitionCHROMAT_FILE: MSMg01no203_e11.b1 PHD_FILE: MSMg01no203_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:23 2005CHROMAT_FILE: MSMg01no203_e11.g1 PHD_FILE: MSMg01no203_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGAGCTGGCTGGACAGCCCTTCTAACTGAATCAGTAACATTCAT
AAGATAGCCTGTCTCATAATATCAGACAAGGAATGACTGAAGAAGACACT
GATTCAGACCTCTGGCTACTACATGGATTGTATGCATCCAGATGCACACT
GCATACACACATACAAACATCTTCACATAAACATTTAAGTGTGTCCATTG
TAGAAAAGAAAACCCATACAGAAAAGAAAGGAAGCATTTAAAGTAAGGGA
AATATCATATTTTTACCTTAAAGATATTGTGATATATATTTCCCAAATTT
TCATTCTTAAGCTATATTTTCTTCATCAAATAATCATTTTCAAATTTTAT
TTTTTCTATTGGCACCCCCCACCACAATAATTATGATTCTTATTTTTTGT
GAAAACGTTGTGTAAAATATGTGTTTAAAGTGTGATTTTACTTTTCCCAG
GAAAAACACATTAGTATCACATATTATATTTTTAACCTAAGAGGAGATAT
TTTGATGGCCATGAACGTCATCATAAATGAATCAGACAAAGGTATAAGCA
ATATAATTTTAAAACGTTATAACATGTTGTTTTCCCGAATTATCTCCTAC
CCTGGTTTTCCATCCAGTCACAGACTCTACTTAAAATATTTGTAGGAACT
GCTCTATTTATGTATCACTCATGG
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTATTCTGAGCAGCAGAGCAT
GATGCCATTAAAAAAATCACTTTTGACCCCAAGCACTGAGAGTCTATAAA
AGGGGGGTCTCCCTTCCCTTATCTCTCGTTCTTTAGTACGGAGTTACCAT
GAAATCAAAGCACTTTTTGCACAAGATTGCACAGTAGCTGATAATAAACT
CTTTGTGATGTACTTCACTGGTAACTCCATATTACTCCCTGTTCCTTATT
GTCTGTTTACCTACTTACTACGCATTTTTTATTGTATGCTCATAAAAGAC
TGACTACTTATTTTAGTCGTTTCCCCCCCCCCCCCCCAAGAATGATTAGA
TTATTTTTTTCTTTTTGTCCCCCCCCCATCTCACNNCAAAATCGTGGGGT
TTGTCCCGGGCCATCCTACCCATTATTCTTCCTATCTTTCTCTCGATATT
ATTATCTCCTTTTCATCTTTCTTTTTCCCCTTACTTCCTTTTCCCCCTTT
TCCTTTTTCCCTCTCCCTCTTATTTTTTTCATTCCTCTTCCTCTATTTCC
GTTCTTTTTCTTTTTCCCCTCTCCCCCTCTTCGCTTCCTTCTCCCTCCCC
TTGTTCCTCCGCTCACTTCTTCCTTTATCTCTTTCCCCGCTTTTTCCCTT
CCCCTCCTCTTTCTTCCCCTTTTCCCCCCTTTCCCTTTATCCACCCCCGC
TTTCCTCTATTTTCCCTCCCCTTTTTTCCTCCTCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_e11.b1 MSMg01no203_e11.b1 CHROMAT_FILE:
MSMg01no203_e11.b1 PHD_FILE: MSMg01no203_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:23 2005
         (289 letters)



>mm_chr1_68476841_68477529
          Length = 689

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaggaatgactgaagaagacactgattcagacctctggctactacatggattgtatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acaaggaatgactgaagaagacactgattcagacctctggctactacatggattgtatgc 428

                                                                       
Query: 61  atccagatgcacactgcatacacacatacaaacatcttcacataaacatttaagtgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atccagatgcacactgcatacacacatacaaacatcttcacataaacatttaagtgtgtc 368

                                                                       
Query: 121 cattgtagaaaagaaaacccatacagaaaagaaaggaagcatttaaagtaagggaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cattgtagaaaagaaaacccatacagaaaagaaaggaagcatttaaagtaagggaaatat 308

                                                                       
Query: 181 catatttttaccttaaagatattgtgatatatatttcccaaattttcattcttaagctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 catatttttaccttaaagatattgtgatatatatttcccaaattttcattcttaagctat 248

                                                          
Query: 241 attttcttcatcaaataatcattttcaaattttattttttctattgg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 attttcttcatcaaataatcattttcaaattttattttttctattgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)