Query= MSMg01no203_f04.b1 MSMg01no203_f04.b1 CHROMAT_FILE:
MSMg01no203_f04.b1 PHD_FILE: MSMg01no203_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:26 2005
(576 letters)
>mm_chr1_65366033_65367007
Length = 975
Score = 770 bits (398), Expect = 0.0
Identities = 460/496 (92%), Gaps = 29/496 (5%)
Strand = Plus / Minus
Query: 5 gaattccatgctgatctacatttacttcaccatttgtaagcgctggtttcttagatacct 64
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaattccatgctgaccta-atttacttcaccatttgtaagcgctggtttcttagatacct 436
Query: 65 cacttctttctttctgcccaccagtgatatctgactgtattcaaaggctgtgaactgatg 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cacttctttctttctgcacaccagtgatatctgactgtattcaaaggctgtgaactgatg 376
Query: 125 gtttagagcttaaagttat-cataacaattacttctctgcaactacgtctggaacagtgt 183
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtttagagcttaaagtt-tccataacaattacttctctgcaactacgtctggaacagtgt 317
Query: 184 tggaagcatcacggagaagcatgcccaaaacagctcaacagcccaaacaacagccctcag 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tggaagcatcacggagtagcatgcccaaaacagctcaacagcccaaacaacagccctcag 257
Query: 244 ttcatttgaacacaatctaacaatttcaagttgtcagccttctacaaacagcctctctgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttcatttgaacacaatctaacaatttcaagttgtcagccttctacaaacagcctctctgt 197
Query: 304 ctctctcttcctctcttcttctctctcttcctctctctctcttcctctc----------- 352
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctctctcttcctctcttcttctctctcttcctctctctctcttcctctcttctttcttct 137
Query: 353 tctctttcttcc-------------cccccctctcacctctgtgtgtgtatctgtgtgca 399
||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 136 tctctctcttcctctctctttctttcccccctctctcctctgtgtgtgtatctgtgtgca 77
Query: 400 t--gagagagctgtaatatataaaatcttatgtatcatataactgaaagtatatattagc 457
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 76 tgagagagagctgtaatatataatatcttatgtatcatataactgaaagtatatattagc 17
Query: 458 ttaatatgaacgtaga 473
|||||||||| |||||
Sbjct: 16 ttaatatgaatgtaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no203_f04.g1 MSMg01no203_f04.g1 CHROMAT_FILE:
MSMg01no203_f04.g1 PHD_FILE: MSMg01no203_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:26 2005
(343 letters)
>mm_chr1_65281656_65282398
Length = 743
Score = 648 bits (335), Expect = 0.0
Identities = 341/343 (99%)
Strand = Plus / Plus
Query: 1 ataagacagaagaaggaagagggagagttaggttttcagtccaatagaggccaaggatac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ataagacagaagaaggaagagggagagttaggttttcagtccaatagagggcaaggatac 260
Query: 61 tggtatcctatctctagaggccttgcctccgggcagggtttttctaaaagtcagcatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtatcctatctctagaggccttgcctccgggcagggtttttctaaaagtcagcatttc 320
Query: 121 ttcaaatagtttagttttctacaactggtcttcctacggaattgtcattattattttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaaatagtttagttttctacaactggtcttcctacggaattgtcattattattttctc 380
Query: 181 accaattgtactggctggttttgtgtgtcaaattgagaaagttatcacagagaaaggagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaattgtactggctggttttgtgtgtcaaattgagaaagttatcacagagaaaggagc 440
Query: 241 ctcccttgaggaaatgcctttatgagatccagctgtaagccattttctcgattagtgttc 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ctcccttgaggaaatgcctttatgagatccagctgtaagccattttctcaattagtgttc 500
Query: 301 aagagtgggagggcccattgtgggtggtatcatccctgggcta 343
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagagtgggagggcccattgtgggtggtatcatccctgggcta 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
