BAC Information

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BAC

Clone NameMSMg01-204K10
Chromosome1 (Build37)
Map Location 96,671,684 - 96,672,025
singlet/doubletsinglet
Overlap genenone
Upstream geneAtg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204K10.T7 (MSMg01no204_k10.b1)MSMg01-204K10.TJ (MSMg01no204_k10.g1)
ACCAG388941AG388942
length740744
length of high quality
(start - end)
502 (45 - 546)342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no204_k10.b1 PHD_FILE: MSMg01no204_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:16 2005CHROMAT_FILE: MSMg01no204_k10.g1 PHD_FILE: MSMg01no204_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGTGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGA
AAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTCACCTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTATCCAAGT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCATACAATATGTACTCTCTGATAAGTGGATATTACCCCCAAACCTA
GGATTACCCCTTATATAATACACTACTCGCTTAACACTTGAAAACTCCAG
AACAATGAAGACTTGATTGGCGCACCATATAGCCCTTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGTAAACACAGAGAAATGCCCTT
GCTTGGCTATTCAAAAGCAGCTTAAGGCAAGAATTTCTTTTACAAATTTG
ATTATGGTCTATATAATTTTAAACTGCCCATATAACTGTATATATAATTT
ATATATTAACTTTATATTATTTATTTTTAAGGAGAACTGGAAAGAAACTA
TATTTAATTTGATCTTTCATTCCTAGACAAATAGTTTGAAGGTAAAGCTA
TAGAATGAACTATAAGAAACATTAAAACCTAGTAGCCAGTGATAAAGATA
TTATTCCATATTTCTTTTATTATAAATTAATTATTTTATTTATTATCATC
CTAAATGTTGCCCACCTCCTGGTCTCCCCTTGCAGAATTCTTCCCCCATC
CTCCCTCCCCTTCACCTCTGAGAGGGTTGCCCACCCCATCCCTGGCATAC
CCCATCCCTGGGGTATCAAGTCTCTACAGGATTAGACACATCTTCTCCCA
CTGAGGCCACACAAGGCAGTCCTCTGCTACATGTGCCTAGGGCCTCAGAC
AAGTCCTTATATGCTCTTTGCTTTGTGGCTCATTGTCTGGAAATCTCCCA
CGGGTCCAGTTTAGCTTACATTCGCCGAACTCCCTATGAATTTGTGCCCC
CTTCAGCTTCCTTCTTTTTTCTCATTTTCCCCCTCTAATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_k10.g1 MSMg01no204_k10.g1 CHROMAT_FILE:
MSMg01no204_k10.g1 PHD_FILE: MSMg01no204_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:16 2005
         (342 letters)



>mm_chr1_96671484_96672225
          Length = 742

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtaaacacagagaaatgcccttgcttggctattcaaaagcagcttaaggcaagaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtaaacacagagaaatgcccttgcttggctattcaaaagcagcttaaggcaagaattt 260

                                                                       
Query: 61  cttttacaaatttgattatggtctatataattttaaactgcccatataactgtatatata 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cttttacaaatttgattatggtctatataactttaaactgcccatataactgtatatata 320

                                                                       
Query: 121 atttatatattaactttatattatttatttttaaggagaactggaaagaaactatattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttatatattaactttatattatttatttttaaggagaactggaaagaaactatattta 380

                                                                       
Query: 181 atttgatctttcattcctagacaaatagtttgaaggtaaagctatagaatgaactataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgatctttcattcctagacaaatagtttgaaggtaaagctatagaatgaactataag 440

                                                                       
Query: 241 aaacattaaaacctagtagccagtgataaagatattattccatatttcttttattataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacattaaaacctagtagccagtgataaagatattattccatatttcttttattataaa 500

                                                     
Query: 301 ttaattattttatttattatcatcctaaatgttgcccacctc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaattattttatttattatcatcctaaatgttgcccacctc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)