BAC Information

Click to search

BAC

Clone NameMSMg01-206B14
Chromosome1 (Build37)
Map Location 128,020,213 - 128,020,606
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream geneLOC383559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206B14.T7 (MSMg01no206_b14.b1)MSMg01-206B14.TJ (MSMg01no206_b14.g1)
ACCAG389836AG389837
length737860
length of high quality
(start - end)
511 (128 - 638)208 (77 - 284)
definitionCHROMAT_FILE: MSMg01no206_b14.b1 PHD_FILE: MSMg01no206_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:09 2005CHROMAT_FILE: MSMg01no206_b14.g1 PHD_FILE: MSMg01no206_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCACTGTGCCTGGAAAACGAGAATCAGAGAGAACAGTATGAGCG
ATGTCTTGATGAGGTATTTGCTGCCGAAGAGGGCAGAGAGAAGCTAGGCT
TGGTTAGGATCTTGATCAGGTCCAAGGGCATATGAATCCCATGCTTCACA
CAATGGTAATGTTTTCTCCCAACAAAAGGAAGTTGTAAACAGATGTCCAC
TCTGAAATATTAGTTTCTTAGCCTCCCCTCCCCCATAAATGCACCCTCTA
CATGCCTCTTTTATCTCGCCCCTCTCCCTTCCTTCCTATCTCTTTCCTCT
CTGCTCTCTTTCTTTCTTTCTCTCCTGTCTCCTTCCTCTTTTTTCTGTCT
CTGTATCTCTTCTCCCCCCCCTTTGCTTCATCCCTCTCTCTGACTTTCAT
CTCTCTCTCTCCTATATGAGTATCCCTCTATGTGTATCTCCTCTTCTCTC
TCTCCCCCTTCCTTCTCTCTGCTGTCTTCCCTTCTCTGTCCTTTCCTTCT
TCCCGCCCTTTCTCTCCTCTCTCTTCTCTTTTCTCTTTTCTCTTCTCTCT
TCTCTCTTCTCTCTTCTCTCTCCCCTCTCCCCTCCCCTCCCCTCATCTTC
CTTCTTTTTTTATTTCCCCCTATCTCTCTCTCTATTTCTCTCTTTCTCTC
TCTCTCCCCCCCCTCTTTTTTCTTTTATCTCTATTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGGCATCACAAACAAAAGAGG
TTATAGCAGAAAGGCCAGGTTGAGCCCTGGTGGATACAATGTTTACTTAG
CATGCAGGAAGCCCAGTGTAGGACCCTGGCATGCATGGTGGTTTATACCT
GTCATCCCACCACTTGGGAGGTGGAGGCAGGGGAACCAAAACTTAAAGTC
ATTCTCAGCTACATAGAATGTTGGAGGCCAATCTGAGCTATAGGAGTTCT
TTCCTCCAAAAAAAAGGGTGTATTTTATGAGCGGAACATCACTTCCTCTT
TCTCTCACCTGCGTTTTTTTATTTTTCCCCCCCCCCCCCCCCTCCTCGTT
TTTATTCCTTTCTCACCCCTTATTTATTTCTTCCCCCCCTCCCCTTATAA
ATAAAATAATCTTTTTTTTTTTTTTCTCCGCTCCCCTCTTTTTATTTTTG
CTCCCCCCCTCCCTTACCTTCACCCTTATCCCCTCCTATTTTTTACCCCA
TCCACACCCATCCTTTTTCTCTCTTATTCTTTATCTCCCATGTTTACCAC
ACCTCCTTTATTTTACTCTTTCGTTTCTTTCCTCCCTTATTCTGTTCTTT
CATCCTTCCCCTTTACCTTTTTTTCTCCCCCCTACCTTCTCTCTTTTTTT
TCCTCACATACCACCTCCTACCCTTCTCCTTTTTTCTTTTTTCTCTCTTC
ATTTTTTCTCTTCTTTTCTCTCATCTCCTTATCTTCTTCTTCCCCTCTTT
ATTACTTCTCCTCACTCTCTTTTATTCTTTCTTCATTCACACTTTCCCCT
TATTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_b14.b1 MSMg01no206_b14.b1 CHROMAT_FILE:
MSMg01no206_b14.b1 PHD_FILE: MSMg01no206_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:09 2005
         (511 letters)



>mm_chr1_128020213_128021123
          Length = 911

 Score =  717 bits (371), Expect = 0.0
 Identities = 389/397 (97%), Gaps = 5/397 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagggcagagagaagctaggcttggttaggatcttgatcaggtccaagggcatatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agagggcagagagaagctaggcttggttaggatcttgatcaggtccaagggcatatgaat 335

                                                                       
Query: 61  cccatgcttcacacaatggtaatgttttctcccaacaaaaggaagttgtaaacagatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cccatgcttcacacaatggtaatgttttctcccaacaaaaggaagttgtaaacagatgtc 275

                                                                       
Query: 121 cactctgaaatattagtttcttagcctcccctcccccataaatgcaccctctacatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cactctgaaatattagtttcttagcctcccctcccccataaatgcaccctctacatgcct 215

                                                                       
Query: 181 cttttatctcgcccctctcccttccttcctatctctttcctctctgctctcttt--cttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |   
Sbjct: 214 cttttatctcgcccctctcccttccttcctatctctttcctctctgctctctttccc--- 158

                                                                       
Query: 239 ctttctctcctgtctccttcctcttttttctgtctctgtatctcttctcccccccctttg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 157 ctttctctcctgtctccttcctcttttttctgtctctgtatctcttctccccctcctttg 98

                                                                       
Query: 299 cttcatccctctctctgactttcatctctctctctcctatatgagtatccctctatgtgt 358
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 97  cttcattcctctctctgactttcatctctctctctcctatatgaatatccctctatgtgt 38

                                                
Query: 359 atctcctcttctctctctcccccttccttctctctgc 395
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  atctcctcttctctctctcccccttccttctctctgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)