BAC Information

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BAC

Clone NameMSMg01-206D14
Chromosome1 (Build37)
Map Location 15,296,966 - 15,297,197
singlet/doubletsinglet
Overlap genenone
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream geneKcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206D14.T7 (MSMg01no206_d14.b1)MSMg01-206D14.TJ (MSMg01no206_d14.g1)
ACCAG389920AG389921
length711729
length of high quality
(start - end)
34 (263 - 296)237 (130 - 366)
definitionCHROMAT_FILE: MSMg01no206_d14.b1 PHD_FILE: MSMg01no206_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:20 2005CHROMAT_FILE: MSMg01no206_d14.g1 PHD_FILE: MSMg01no206_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATAATTTGCGGCGCTAAAGATCCATTTCGAACCCGANGNGGAANNN
NANTTTGCCCNAGCGGAGGNNGAGAACANNNGAAAAAAAAAAGGNAANAN
NNNNAATTATCACAGAAAGAAAGANGGGAANAANANNGGGAANCNACCCC
ANANNAGCCAGAAGGGNNAAGAANAAAAANNCAGGNGACAGNAGAAGAAG
GNGAGGAAGNGGAGAAAGAGGAANACACNNNNANAGNNGTTTTTTTTGAA
AGATTGTAAAAACACTCTGGAAATCAGTCTGGCGGTTCCTCATAAAACCG
GACATTTTCCTCCTTTGGANACAGCAAGACCGCGGCGGGGCAGATTTTTT
TTTTTCCCCCCCCTCGCCCTAAGGACACATGCTTCACTATGTTCGTAGCA
GCCACCACAAAAATAAAAAAAAACTTGGGGGAGGGCGGATGTCCCTCAAC
ATAGAAATGGATACAGAAAATGTGGCACATTACACAGGGCAGTACTACTC
CGCATTTACAAACAATAAATTTATTAAATTTTTTAGGCCAATGATTATCT
CTGGAGGATACCATCCTGAGTGAGGTAACCCAATCACAGAAGAAGTCTTT
TGCTTTGCACTTCTTGTTAGGTGGAGATTAACCCTGTTTTTTTTTTTTTT
TAAGAACCGATTTGCTTTTTTTTGAACTCTTCCCAGACCCATTTTTCCGC
TTTTATCTCTC
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGAAAATTGAGCAAACCAGT
AATACTACTGAATTCCAAATTTCCTCGACCCTCTCTGCAAGTCAGGCTCC
AGTAAGGACTGAGATGCTGCTGTGGTCTGAGCTCAGGGTTCCAACTCTCT
TCTGCAAACAAAGGCCACTCATGTCATATGACCCTTGGTTTTAACACAAC
TATTTACTCTTCAGTTTAAAAAAAAAAAAACACCTAGAACTTTTATCCTT
GGTACAAAAATGCTTTTTTTAGATGCTCTCAAATAGATCCCAAAAGCTTT
GCCTTTCTGTGGTCTTTTGATGCGCTCGCCCCACAGTCAGAAGGGAAAGA
CAGGCATTAAAGAAGATGACCCATGAGCATTCTTCAATAACACAGACGTC
TCCAAATCTCTAAATAAACTATTTTATTTAGACACCATTTTCTTCACTAG
AATACAAAAGTATTTAAAGAATTAGACCACTTATGTGTGCGTTTGCTATA
TTTAGAGCATAAAGGCTCTAGACTTACTTTCAGACCAATGGTCTTTTTAG
TGCTTCTTTAAAAAATATTTCTTTTATTTTTTGAGATTATAAAGTAATTA
CATTATTCCCCCTTTCCTTTCTTACCTCTGAACCTTCCCATATTCACCTC
CTTGTTCTCTTTCAAATCACTGTCATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_d14.g1 MSMg01no206_d14.g1 CHROMAT_FILE:
MSMg01no206_d14.g1 PHD_FILE: MSMg01no206_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:20 2005
         (237 letters)



>mm_chr1_15296766_15297399
          Length = 634

 Score =  416 bits (215), Expect = e-121
 Identities = 229/235 (97%), Gaps = 3/235 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctctgcaagtcaggctccagtaaggactgagatgctgctgtggtctgagctcagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cctctctgcaagtcaggctccagtaaggactgagatgctgctgtggtctgagctcagggt 373

                                                                       
Query: 61  tccaactctcttctgcaaacaaaggccactcatgtcatatgacccttggttttaacacaa 120
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 372 tccaactctcttctgcaaacaaaggccactcatgtcgtatgacccttggttttagcacaa 313

                                                                       
Query: 121 ctatttactcttcagtttaaaaaaaaaaaaacacctagaacttttatccttggtacaaaa 180
           ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctatttactcttcagttt---aaaaaaaaaacacctagaacttttatccttggtacaaaa 256

                                                                  
Query: 181 atgctttttttagatgctctcaaatagatcccaaaagctttgcctttctgtggtc 235
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 255 atgctttttttagatgcactcaaatagatcccaaaagctttgcctttctgtggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 634
Length adjustment: 9
Effective length of query: 228
Effective length of database: 625
Effective search space:   142500
Effective search space used:   142500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)