BAC Information

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BAC

Clone NameMSMg01-206E12
Chromosome1 (Build37)
Map Location 128,319,295 - 128,319,583
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206E12.T7 (MSMg01no206_e12.b1)MSMg01-206E12.TJ (MSMg01no206_e12.g1)
ACCAG389955AG389956
length670761
length of high quality
(start - end)
431 (5 - 435)304 (178 - 481)
definitionCHROMAT_FILE: MSMg01no206_e12.b1 PHD_FILE: MSMg01no206_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:24 2005CHROMAT_FILE: MSMg01no206_e12.g1 PHD_FILE: MSMg01no206_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGATCCGCGGAATTCCTTCTTTCCGTCCTCTACCATCATCATGAGATA
TGCTTTTAAATCCAGGTCTACCTTTTCTGGTGCCGTTAGGGTGTCCTGGA
TTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCT
TCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGG
AGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTT
TGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTT
CAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGT
GTACAGTTATCTGGTGTTTGGACCCCCCCCTGGCTGAAGGTGAAGGCCCA
AAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCA
GTTGTCTGGAGTCGAAGATGTCTTAGCCTCTCAAGCTCTGTGGTTCTTGT
TGGTAAGGTGGCTGATTGTCTGGAGCTTACGATGCCGCCGTTTTAGAATC
TCTGTGATTCTCTTGCTGTCCCTTATTCCGTTGTCATTCTGTATTCCACT
TTTGTCACCTTTTGTACTCTGTTCTCCGTGGTATTTCTGTAGCCTATCAC
TTTTCCTTTCTCCGTCTGTT
CGCTCGTTTTTCTTCNTCTNCTCCTCTTTTTTCCTTTTTCCTCTTTCCCC
TCTTCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTACCACAGAGGAGAAATGA
CTGTTCCTGAAAAATGCATGTGCATCGGCAGGTGCCATCTCTTGCACTTT
ACAGAAAGAAGGAAACACCACAAGTTCGGACAAAGACTTCCCTACAACTC
TCAGCCTGACCTTGAAATTTGAAATTCGCTGAGGTAAACAGGACAGCACA
CAGAATGTCGCTCTTGATACCTGTCTAGAATTTCACCTCCACCCCAATTT
CTAGACTTCTTAACAAGACCTGCTACAGCAAATCTCCCTTGTAGTGTTCA
AGACAGAAACCTCTACTCTCCCTGTTAGGTCGGCCTGTCCAAAGCCCATC
TTCTTTGACTTTTAGGCACCCTGACCCAGGAAATGGTAGTCTTCCTGACA
AACAGCTACAGGGTATGTCCTGACTTGTCCCCTCAAAGTGCATTTCTGCC
ACATTTTATCAGGCTTGTCTTTCCTTTCTCGACAATATTAACCCAGGACT
GCTGCTGCAAGCATCCAGCCTTGACTCTGTTGCCTATAGGGACCGCTGAT
GAGTGCGTATCATGACCGCTGAGCCTAATGTTTTTACCTTAAAAACGCTC
CCTTTCAGTTATAACTGCCTGGGCCACACCACACCATACACTTACACTAA
TACACCCCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_e12.g1 MSMg01no206_e12.g1 CHROMAT_FILE:
MSMg01no206_e12.g1 PHD_FILE: MSMg01no206_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:24 2005
         (304 letters)



>mm_chr1_128319095_128319798
          Length = 704

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaggtgccatctcttgcactttacagaaagaaggaaacaccacaagttcggacaaagac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 gcaggtgccatctcttgcactttacagaaagaaggaaacaccacaagttcagacaaagac 260

                                                                       
Query: 61  ttccctacaactctcagcctgaccttgaaatttgaaattcgctgaggtaaacaggacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccctacaactctcagcctgaccttgaaatttgaaattcgctgaggtaaacaggacagc 320

                                                                       
Query: 121 acacagaatgtcgctcttgatacctgtctagaatttcacctccaccccaatttctagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacagaatgtcgctcttgatacctgtctagaatttcacctccaccccaatttctagact 380

                                                                       
Query: 181 tcttaacaagacctgctacagcaaatctcccttgtagtgttcaagacagaaacctctact 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tcttaacaagacctgctacagcaaatctcccttatagtgttcaagacagaaacctctact 440

                                                            
Query: 241 ctccctgttaggtcggcctgtccaaagcccatcttctttgacttttagg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccctgttaggtcggcctgtccaaagcccatcttctttgacttttagg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)