Query= MSMg01no206_h09.b1 MSMg01no206_h09.b1 CHROMAT_FILE:
MSMg01no206_h09.b1 PHD_FILE: MSMg01no206_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:39 2005
(663 letters)
>mm_chr1_147353545_147354607
Length = 1063
Score = 690 bits (357), Expect = 0.0
Identities = 420/443 (94%), Gaps = 6/443 (1%)
Strand = Plus / Minus
Query: 223 ctttatcttacagcacaagccattactgttctgtttaggaattttcctcctgtgcccata 282
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1063 ctttatcttacagcacaagccattactgttctgtttaggaattttccccctgtgcccata 1004
Query: 283 tcttcgtggcttttccccactttctcctctataaatttcagtgtctctggttttatatgg 342
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1003 tcttcgaggcttttccccactttctcctctataaatttcagtgtctctcgttttatatgg 944
Query: 343 agttctttgatccacttagacttgacccctt--tacaaggagataactgttgttccgatt 400
|||||||||||||||||||||| || ||| ||||||||||||||||||||||| |||
Sbjct: 943 agttctttgatccacttagactcga--gctttgtacaaggagataactgttgttccaatt 886
Query: 401 tctatgtatgattacattatcttatgttcttaaagacactaatatttataatatatgagt 460
||||||| ||||||||||| || ||||| |||||||| |||||||||||||| ||||||
Sbjct: 885 tctatgtgtgattacatta--ttctgttcctaaagacagtaatatttataatacatgagt 828
Query: 461 atacaagtttacattcaattaggtttcacaggactaggtacaatatcaaatactttgttt 520
|||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 827 atacaaatttgcattcaattaggtttcacaggactaggtacaatattaaatactttgttt 768
Query: 521 taaagtatttgtcattgtaaccaacatgcatgttcatattttcaaatgagaaatgtttga 580
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 767 taaagtatttgtcattgtaaccaacatgcatattcatattttcaaatgagaaaagtttga 708
Query: 581 gtaagaatatgaagttcaattcttcatatcatggaattaaaagaaatgtgaatgctgggg 640
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 707 gtaagaatatgaagttcaattcttcatatcatgtaattaaaagaaatgtgaatgctgggg 648
Query: 641 ttcttcctgttccaaccaaagca 663
|||||||||||||||||||||||
Sbjct: 647 ttcttcctgttccaaccaaagca 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_h09.g1 MSMg01no206_h09.g1 CHROMAT_FILE:
MSMg01no206_h09.g1 PHD_FILE: MSMg01no206_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:39 2005
(287 letters)
>mm_chr1_147280588_147281274
Length = 687
Score = 555 bits (287), Expect = e-162
Identities = 287/287 (100%)
Strand = Plus / Plus
Query: 1 catttgagtttgaagatggtttcctgtcttcctttatttttagcatgaagttttctttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttgagtttgaagatggtttcctgtcttcctttatttttagcatgaagttttctttta 260
Query: 61 atgttcagctttttgttttgattttaaatggatatatactattaagtgaatgagactcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttcagctttttgttttgattttaaatggatatatactattaagtgaatgagactcca 320
Query: 121 ctgtgattcacttgtttatttaatccaaaaaattcagggatgtctgtaaattgcagtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgattcacttgtttatttaatccaaaaaattcagggatgtctgtaaattgcagtttt 380
Query: 181 gcccttgttgagaagtgttgttggttgacttaaggagggaccagatataatttctattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccttgttgagaagtgttgttggttgacttaaggagggaccagatataatttctattat 440
Query: 241 tccagtactgaaagaaaaaatattgatttatacattttttaaaaatc 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagtactgaaagaaaaaatattgatttatacattttttaaaaatc 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
